Streptomyces dangxiongensis: D9753_23705
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Entry
D9753_23705 CDS
T08044
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sdd
Streptomyces dangxiongensis
Pathway
sdd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D9753_23705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdd03019
]
D9753_23705
03009 Ribosome biogenesis [BR:
sdd03009
]
D9753_23705
Enzymes [BR:
sdd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D9753_23705
Messenger RNA biogenesis [BR:
sdd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D9753_23705
Ribosome biogenesis [BR:
sdd03009
]
Prokaryotic type
rRNA processing factors
D9753_23705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AYN43837
UniProt:
A0A3G2JS35
LinkDB
All DBs
Position
5266699..5271096
Genome browser
AA seq
1465 aa
AA seq
DB search
MPAVSAAEADEVAAVTGTPEDTGQPHGDAAAQAPAAEEAAPARPRRRATRRASAPVGAPA
PAEAAETVVPAASAGAEPADSAVAEAGAVVVGEEAAPRRTRRRATRSVSTPTDGATGASE
TSETARTVEPAQSAEPAVVEEPAVTEQPAEEAAPRRTRRRATRSVPTAADGATGATETTR
TAEAAEPAVVEEPAVTEQPAEEAAPAGRPRRRATRRASAPTGAPVSAEAAPAETVIPAAD
AGTAQEPAAEAPAEAEAPAARPRRRATRRASAPAGAPQGAEENTAVAEAAPAVQEAPETP
RQPAAEEGVQDAAEETASRRTRRRATRRVSAPAGTPMSEEAAEAEQAEEPAVPSETQPVP
ATAQTAEPARASQAPAPAAAESVPQRRARRRGERAESGFAEPARPASAGSAEDADPRRPA
RPAVAVFQAPVFTEPRFQTPQRAAAEAAAEAVGEEETEEYADERAETGSRRRRRRRGAAA
EETRPVRAVTEDTEDEEAEEAEDADEAPEAAEDLADADVDAEEGDDTEGADGFEESGSRR
RRRRGGRRRRRGDAADGEGAEAEDDEPAAAQDAEDTAEQEEEDADDVRGDDSAGSSSSRR
RRRRRRRAGDTAAEPEPSVDDPERTVVKVREPRKLSEPSDEVQSIKGSTRLEAKKQRRRE
GREQGRRRVPIITEAEFLARREAVERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQSTSY
VGNVYLGKVQNVLPSMEAAFIDVGKGRNAVLYAGEVNFGALGMANGPRRIESALKSGQPV
LVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPE
DAGVIVRTAAEGASEEELRRDVERLQGQWEDIQKKAKNGGGSSAPTLLYGEPDMTVRVVR
DIFNEDFSKVIVSGDEAWQTIHGYVAHVAPDLAGRLSRWTSETDVFATYRIDEQLAKALD
RKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDL
GGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLES
FSETCVHCNGRGVVVHLDQATANGGGGKRKKRGRGGDAQEHVHETAAVAVETGEAVEPEV
ETAVEVAAEAAEPVALPGPDFAPDEELYSSVAEAEAAATRGRSRRRTSRRASAPAGAPKP
ERAERTSRSERAERAARAEEAEAGFAVEAEPAGVPTAQHVTAEEAAARPVPSEPAAEALA
EPVAAEDQVVPAPQAEAPAAEEAAPKGRTRRRATRKVSAPAGSPAGAEAAVVTVPEAAPA
AEVPAAEPVAGVPAAEEAPAPAEAAAPARPRRRAVRKATAPTASEEAAVVVVPSAPAEPA
VEQAPVEQVPVAEETAEEVAPAKKTARKAAKKAPAKKATAAKKTAAKKTAAKKTTAKKAT
KTAKTAAAKSTAKKTSTVPTAGDEG
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
gtgccggccgtatcggccgcggaagcggacgaggtggccgcggtgaccgggacccccgag
gacaccggacagccgcacggggacgccgccgcgcaggcgcctgccgccgaggaggccgcg
ccggcgcgtccgcgccgccgggccacccgccgcgcgtccgcgcccgtgggcgccccggcg
cccgccgaggccgcggagaccgtcgtaccggccgcgtccgcgggcgccgagccggcggac
tccgccgtcgccgaggccggcgctgtcgtcgtcggcgaggaagccgctccgcgccgtacc
cgccgccgggccacccgcagcgtgtcgacgccgaccgacggtgccaccggtgcgtcggag
acctccgagaccgccaggactgtcgagcccgcacagtccgccgagcccgctgtcgtggag
gagcccgccgtgacggagcagcccgccgaggaagccgctccgcgccgcacccggcgccgg
gccacccgcagcgtgccgacggccgccgacggtgcgaccggcgccacggagaccaccagg
accgccgaggccgccgagcccgctgtcgtggaggagcccgccgtgacggagcagcccgcc
gaggaagccgcgcccgccgggcgtccgcgccgtcgcgcgacccgccgtgcgtcggcgccc
accggcgcacccgtgtccgccgaggccgcgcccgccgagaccgtgatcccggccgccgac
gccgggacggcccaggagcccgccgccgaggcccctgccgaggccgaggctcccgccgcg
cgtccgcgtcgccgggccacccgccgggcgtccgcgcccgccggtgccccccagggtgcc
gaggagaacacggccgtcgccgaggccgctccggccgtgcaggaggcgcccgagacgccc
cggcagccggctgccgaggagggcgtccaggacgccgccgaggagaccgcttcgcgtcgt
acgcgccgccgggccacccgccgggtgtccgcgccggccggtacgcccatgagcgaggag
gccgccgaggccgagcaggcggaggagcccgcggtgccctccgagacccagccggtcccc
gcgaccgcgcagaccgccgagcccgcccgtgcgtcgcaggcccccgcgccggccgccgcc
gagagcgtgccccagcgccgggcccgccgccggggtgagcgcgccgagtccgggttcgcc
gagcccgcgcggccggcctcggccgggtccgccgaggacgccgacccgcgccggcccgcc
cgccccgccgtcgccgtcttccaggcgccggtgttcaccgagcccaggttccagaccccg
cagcgtgccgccgccgaggccgccgccgaggccgtgggtgaggaggagaccgaggagtac
gcggacgagcgcgccgagaccggttcgcgccgccgtcgtcgccgccgcggtgccgccgcc
gaggagacccggccggtgcgggccgtgaccgaggacaccgaggacgaggaagctgaggag
gccgaggacgccgacgaggctccggaggccgccgaggacctcgccgacgccgacgtcgac
gccgaggagggcgacgacaccgagggtgccgacggcttcgaggagtccggttcgcgccgc
cgtcgccgtcgtggcggacgccgccgccggcgcggtgacgcggccgacggtgagggcgcc
gaggccgaggacgacgagccggccgccgcgcaggacgccgaggacaccgccgagcaggag
gaagaggacgccgacgacgtccggggcgacgactccgccggttccagctccagccgccgc
cgtcgccgccgtcgccgccgggccggtgacacggccgccgagcccgagccgtccgtcgac
gacccggagcgcacggtcgtcaaggtccgcgagccgcgcaagctcagcgagccgtccgac
gaggtgcagtccatcaagggctcgacccgtctggaggccaagaagcagcgccgccgggaa
ggccgcgagcagggccgccgccgggtgccgatcatcaccgaggccgagttcctggcccgc
cgcgaggccgtcgagcgggtgatggtcgtccgccagcacggcgagcgcacccagatcggc
gtgctcgaggacggtgtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtac
gtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtcgatggaggccgccttc
atcgacgtcggcaagggccgcaacgcggtgctgtacgccggtgaggtcaacttcggcgcg
ctgggcatggccaacgggccgcgtcgcatcgagtccgccctgaagtccgggcagcccgtg
ctcgtgcaggtcaccaaggacccgatcggtcacaagggcgcgcgcctgaccagccaggtc
tccctgcccggccgctacctcgtgtacgtgcccgagggctcgatgaccggcatcagccgc
aagctgcccgacaccgagcgggcccggctgaagaccatcctcaagaagatcgtccccgag
gacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggaggagctgcgccgc
gacgtcgagcggctccaggggcagtgggaggacatccagaagaaggccaagaacggcggc
ggctcgagtgcgcccacgctgctctacggcgagcccgacatgaccgtccgggtcgtccgc
gacatcttcaacgaggacttctccaaggtcatcgtcagcggtgacgaggcctggcagacg
atccacgggtacgtcgcgcacgtcgccccggacctggccgggcggctgtcgaggtggacg
tccgagaccgacgtcttcgccacgtaccggatcgacgagcagctcgccaaggcgctggac
cgcaaggtctggctgcccagcggcggttcgctggtgatcgaccggaccgaggcgatggtc
gtcatcgacgtcaacaccggcaagttcaccggccagggcggcaacctggaggagacggtc
accaggaacaacctggaggcggccgaggagatcgtgcgtcagctacggctgcgcgacctc
ggcggcatcatcgtgatcgacttcatcgacatggtcctggagtcgaaccgggacctggtg
ctgcgccgcctgctggagtgcctgggccgggaccggacgaagcaccaggtggccgaggtc
acctcgctgggcctggtgcagatgacccgtaagcgggtcggccagggcctgctggagtcc
ttctccgagacctgcgtccactgcaacggccgcggtgtcgtcgtccacctcgaccaggcc
accgcgaacggtggcggcggcaagcgcaagaagcgcggccggggcggcgacgcccaggag
cacgtgcacgagaccgccgccgtggccgtggagaccggcgaggccgtcgagcccgaggtg
gagacggccgtggaggtggccgccgaggccgccgagccggtcgcgctgcccgggccggac
ttcgcaccggacgaggagctgtacagcagcgtcgccgaggcggaggcggcggccacccgt
ggccgttcgcgtcgccggacgagccgccgggcgtcggctccggcgggcgcgccgaagccg
gagcgggccgagcggacgtccaggtccgagcgggccgagcgggcagcgcgggcggaggag
gccgaggccgggttcgccgtcgaggccgagcccgccggggttccgaccgcgcagcacgtc
accgccgaggaggcggcggcgcgtccggtgccgtccgagccggccgccgaggcgctggcc
gagcccgtggccgccgaggaccaggtggtcccggcgccgcaggccgaggccccggccgcc
gaggaggccgcacccaagggccgtacgcgccgtcgggcgacccggaaggtgtcggccccg
gccggttcccccgcgggtgccgaggcggccgtcgtgacggtgccggaggccgcgcccgcg
gccgaggtgccggccgcggagcccgtcgccggggtcccggccgccgaggaggcgcccgcg
cccgccgaggccgccgcaccggcccgtccgcgccgccgtgcggtgcgcaaggccaccgcg
ccgaccgcgtccgaggaggcggccgtcgtggtcgtcccgtcggccccggcggagcccgcg
gtggagcaggccccggtggagcaggtcccggtggccgaggagacggcggaggaggtcgcg
ccggccaagaagaccgcccgtaaggcggccaagaaggccccggcgaagaaggccaccgcc
gccaagaagaccgcggccaagaagacggccgccaagaagacgacggccaagaaggcgacg
aagaccgccaagacggccgccgcgaagtcgacggcgaagaagaccagcacggtccccacc
gccggcgacgagggctga
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