Saccharophagus degradans: Sde_0073
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Entry
Sde_0073 CDS
T00335
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sde
Saccharophagus degradans
Pathway
sde03030
DNA replication
sde03410
Base excision repair
sde03420
Nucleotide excision repair
sde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sde_0073
03410 Base excision repair
Sde_0073
03420 Nucleotide excision repair
Sde_0073
03440 Homologous recombination
Sde_0073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sde03032
]
Sde_0073
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_0073
Enzymes [BR:
sde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sde_0073
DNA replication proteins [BR:
sde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sde_0073
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Sde_0073
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sde_0073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
ABD79337
UniProt:
Q21PP2
LinkDB
All DBs
Position
92145..94925
Genome browser
AA seq
926 aa
AA seq
DB search
MSNSSLPLLLVDGSSYLYRAFHAMPPLTTSSGQPTGAVRGVVNMLRKLAKDYPESPIAVI
FDAKGKTFRDDIYSDYKANRPPMPDDLRAQIEPLHTIIRAMGLPLIIQDGVEADDVIGTY
AQQATEKGIPVVVSTGDKDMAQLVSEHVTLVNTMTETVMDIAGVNEKFGIPPSLIIDFLA
LMGDKVDNIPGVPGVGEKTALALLQNLGSVEDIYANLDKVPTLEVRGAKSLAKKLEDNRD
KAFLSYELATIKLDVELEHSLEELIPVDPDNDALLALFTELEFKGWVTELSKGGGTKAKK
ASPNAKQAAEEAPAAAPEEAVEINRDNYETILTEASLEAWVDRLSKAELFAFDTETTSLN
YMEAKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVLGKLKPLLEDENVKKVGQNLK
YDASVLANHGIALQGIAFDTMLESYVVNSTANRHDMDTLALAHLGHTNISFEEIAGKGAK
QLTFNQIQLDQAAPYAAEDADITLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVER
TGALIDATILGQQSAELAADLERIQREAWELAGEEFNLASPKQLGVILFEKLGIPVIKKT
KTGAPSTAEEVLQELALDYPLPALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSYNQA
VTATGRLSSTDPNLQNIPIKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEG
LTNAFNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMSAFGLARQLHIGRN
DAQRYIDTYFDRYPGVARYMEDIRVFAKEHGYVETLMGRRLYLPEINASNGMRRQAAERT
AINAPMQGSAADIIKKAMIDVDKWLSTLKVDAKMIMQVHDELVLEVAEDQIEPVTATLCD
IMSAALKLDVPLLVEAGVGMNWDEAH
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattcgtcgctaccgctacttcttgttgatggctcttcgtatttatatcgagct
ttccatgcaatgccgccacttaccacctccagtgggcagcccacgggcgcggtgcgcgga
gtagttaatatgttgcgcaagctcgccaaggattaccccgaaagcccaatagcagtaatt
tttgacgccaagggcaaaaccttccgcgatgatatttatagcgattacaaagccaatcgc
ccgccaatgcccgatgatttgcgcgcacaaattgagccgttacacaccattattcgcgca
atgggcttgccgcttattattcaagatggggtagaagccgacgatgtaattggtacttac
gcccaacaggccaccgaaaaaggcataccggttgtggtatctactggcgataaggacatg
gcgcagttagtcagtgagcacgtaacacttgtgaacaccatgaccgaaaccgtcatggat
attgccggtgttaacgaaaaatttggtattccgccttcgctaattatcgatttcttggcg
ttaatgggcgataaggtcgacaatattcctggcgtgcccggcgtaggtgagaaaacagcc
ttagcgctactgcaaaacttaggcagtgtagaagatatttacgccaatttagacaaggta
cccaccttagaggtgcgcggtgcaaaatcgttggcgaaaaagctcgaagataatcgcgac
aaagcgtttttatcgtacgagctggcaaccatcaaactagatgtagagctagagcacagc
cttgaagagttaattcccgtcgacccagacaacgatgcgttgctggccttgtttaccgaa
ctggaatttaaaggttgggttaccgagctctcgaaagggggcggcactaaagccaaaaaa
gctagccccaacgctaagcaggcagcagaagaggcgccagccgccgcgcccgaagaagcc
gtagaaattaaccgcgataactacgaaaccatcttaaccgaagccagcttagaggcgtgg
gtagaccgcctaagcaaagcagagctgttcgcgtttgataccgaaactaccagccttaac
tatatggaagctaaagtggtgggtgtttcgtttgctgtggccccgggagaggccgcctat
gtgccgtttggacacgattacttgggcgcgccagagcagctaagtgaagagcaagtgctg
ggtaagctaaagccgttacttgaagacgaaaatgttaagaaagtcggccaaaatcttaaa
tatgacgcaagtgtgttggcaaatcacggtattgccctgcagggtatagcgttcgatacc
atgctggaatcttacgtggtgaactccaccgccaaccgtcacgatatggatacccttgcg
ctggcgcatttaggtcacaccaatatttcatttgaagaaattgccggtaagggcgctaag
caacttacttttaaccaaattcaactcgaccaagccgcaccttacgccgccgaagatgcc
gacataactctgcgtttgcaccaagcgctatggccacaagtggaggccgtagaaggaata
aagtctttgttcgaaaatgtcgagctgccgttggtgccggtgttatctaaggtagagcgc
acaggcgcattaattgatgccactattctcggccagcaaagtgccgagctggccgccgac
ttagagcgcattcaacgcgaggcgtgggaattggccggtgaagagtttaatttagcctcg
cccaaacaattgggtgtaattttgttcgaaaagctgggcatccccgttattaaaaagacg
aaaaccggcgccccctcaaccgcagaagaagtgctgcaagagctggctttagattacccc
ttgcccgcactgttactggagcagcgcggcttggcgaagttgaaatctacttataccgac
aagctgccaaccatgattaacccccatactgggcgggtgcatacatcctataaccaagca
gtaacggcgactgggcggttaagttctaccgaccccaatttgcagaatattcctattaaa
accgaagctgggcggcgtgtgcgcaaggcgtttatcgcccccgagggttaccgcatagtc
gcggctgactactcgcaaattgaattgcgcattatggcgcacctatcgggcgacgaagga
ttaaccaacgcgtttaaccaagggttggatgtgcacagtgccactgccgccgaagtattt
ggcaccagtgtagagagcgttaccccagagcagcgccgcagcgccaaagccattaacttt
gggcttatatacggcatgtcggcgtttggcttggcgcgccagctgcacattggtcgcaat
gatgcccagcgctacatagatacctatttcgatcgctaccctggtgttgcacgctatatg
gaagatattcgtgtattcgcgaaggagcatggctacgtagaaacgttaatgggccgcagg
ttgtatttgccagaaattaacgccagtaacggtatgcgcaggcaggcggcagagcgcacc
gcaatcaacgcgcccatgcaagggtctgcggcagatatcatcaaaaaagcgatgattgac
gtcgataagtggctatctaccctaaaagtagacgcgaaaatgataatgcaggtacacgat
gaattggtgctagaggttgccgaagaccaaatagagccagtaaccgccaccctgtgcgat
attatgtcggcagcgcttaagttagatgtaccgctattggttgaagccggtgtggggatg
aactgggatgaggcgcactag
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