Saccharophagus degradans: Sde_0647
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Entry
Sde_0647 CDS
T00335
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
sde
Saccharophagus degradans
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sde03009
]
Sde_0647
Enzymes [BR:
sde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sde_0647
Ribosome biogenesis [BR:
sde03009
]
Prokaryotic type
rRNA helicases
Sde_0647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_19
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABD79909
UniProt:
Q21N20
LinkDB
All DBs
Position
816509..817903
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AA seq
464 aa
AA seq
DB search
MSDSSNTAFSSIGLQPGLMQNLESLGYNTMTPIQAQSLPNIIAGKDVIGQGKTGSGKTAA
FGLGLLNSLDVKRFYVQSLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQI
GSLEHGAHIVVGTPGRVEEHVRKNNLDLSKLSVLVLDEADRMLEMGFQAALDAIIETMPK
QRQTLLFSATFPEEIQAIASRIMTAPVMTQVESTHDTSTIKQRFYKVDNDDQRLLAVRLL
LLQHKPESAVVFCNTKRETQMVADDLAGHGFTALALHGDLEQRDRDLTLVRFANGSATVL
VATDVAARGLDIESLDAVINYHIARDMEVHVHRIGRTGRAGAKGIACSIYSEKEHFKLAR
LEETMGQQVVNDKLPPTSVLDYPAPKPKMATLQIDGGKKQKVRPGDIVGGLTGENGIAGT
EIGKISVFDNSSYVAVALPVMKTALNKIRDGKLKGRNFRVRAIT
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgattcatccaataccgccttttcttctattggcctgcagccaggtttaatgcaa
aacctagaatcgcttggctataacaccatgacgcccattcaagcccaaagtttaccgaat
attattgccggtaaagatgtgatagggcagggtaaaactgggtcgggcaaaacggcggca
tttgggttagggctgctgaatagtttggatgtaaagcgcttctacgtgcagagccttgtg
ctgtgcccaacccgagagctagccgatcaggtagcgaaagaaatccgacggcttgctcgc
gccattcacaatatcaaagtgctcactttgtgcggaggtatgccctttggcccgcaaata
ggttcgctggagcacggtgcccatatagtagtgggtacccctggccgtgtagaagagcat
gtacgtaaaaataatttagacctaagcaagctttctgtattggtgctggatgaagcagac
cgcatgctagaaatggggtttcaggcagcgctagatgccattatagaaaccatgcctaag
cagcgccaaacactgctttttagcgcaacgtttcctgaagagatacaagccatagccagt
cgcataatgacggcaccagtaatgacgcaagttgaatctacgcacgataccagcacgatt
aagcagcgcttttacaaagttgataacgacgatcaacgtctattggcggtgcgcttactt
ctactgcaacacaaacctgaatctgccgtagtgttttgcaacaccaagcgcgaaacacaa
atggtggccgatgatttagctggtcatggttttactgcgttggcattacatggtgatttg
gagcagcgcgatagagatttaaccctagtgcggtttgccaatggcagtgccaccgtgttg
gtagccaccgatgtagcggcacgcgggttagatattgaatcgttagatgctgttattaat
tatcacatagcgcgcgatatggaagtgcacgtacaccgtattggtcgcaccggccgtgcg
ggcgcaaaaggtattgcgtgctctatttatagcgaaaaagaacattttaaattagcgcgg
ttagaagaaaccatggggcagcaagtggttaacgataagttaccgccaacaagcgtgctg
gattaccctgcacccaaacccaaaatggccacgctgcaaattgatggtggtaaaaagcaa
aaagtacggcctggggatattgtcggcgggcttaccggtgagaacggtattgcaggtaca
gaaataggtaagattagtgtttttgataattcgtcttacgtggcggttgctttgccagta
atgaaaactgctttaaataaaattcgcgatggaaaattaaaaggccgcaattttcgagtg
cgcgccattacttaa
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