Saccharophagus degradans: Sde_0942
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Entry
Sde_0942 CDS
T00335
Symbol
pel1C
Name
(GenBank) putative pectin/pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sde
Saccharophagus degradans
Pathway
sde00040
Pentose and glucuronate interconversions
sde01100
Metabolic pathways
sde02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Sde_0942 (pel1C)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sde_0942 (pel1C)
Enzymes [BR:
sde01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Sde_0942 (pel1C)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
CBM_35
CBM_35_2
DUF7383
Motif
Other DBs
NCBI-ProteinID:
ABD80204
UniProt:
Q21M75
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All DBs
Position
1217531..1219840
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AA seq
769 aa
AA seq
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MRNTKHLLNSGAVLLASSIATAAMAGPVGFASLNGGTTGGQGGQVVYANTGTQINEAMCN
RPSHDTPLIIYVSGTINHGNTEKVSGNCDTTGDEIQFKKVKNLSLIGTGNGAVFDQIGIH
LRETSNIILQNLHIKNVKKSGSPTSNGGDAIGMESGVYNVWVDHCELEASGGEKDGYDSL
LDMKATTQYVTVSYTYYHDSGRGGLMGSSDSDDTNTYVTFHHNYYKNMDSRLPLLRHGTA
HAFNNYYDGITKSGMNPRIGGQIKAENNYFENAHNPIGTFYTNDMGYWDLSGNIFGNNVT
WASADDETPAGPNPQSTTSIHISYPYSLDDATCVPKIVKATAGVGNGLAVSTGGSNCGTS
SSSSSSSSSSSTSSTSSTSSSSSSSNSSSGGSGVNLSIGAGSDGSSKGAGSYGDVRDGNM
STYWAPSGSTGRVSIKWSSATTVSSIVIKEAAGFEGNITGWQVVNNENGAVLKSGSNAGV
ISFSPVSTTKLNFEITSSNGMPTVAEFETYSGTVGGTSSSSSSSSSSSSSSSSSSSTSSS
GGSANLGTSVSGDQVSLNWSTSNIDVGSQQVYRDTDSNPSGRVRISAGVSGNSYTDYGLA
SGTYYYWIKITDQNGVVYNTNAAEAVVGSQAPTTFTAQESAGFCSVNGSVDSNNAGYTGD
GFVNTDNASGNAAVYAFNAPSAGMYSLQVRYANGSSARPGDVLVNAGNIGTFDFSSTGSW
TSWANSNELSAYFSAGNNTVRIQATNSGGLPNLDSVSVTGNAPAAGNCN
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacactaaacacctactcaatagcggtgccgtattgctagctagcagtattgca
acagctgcgatggcggggcctgtgggctttgcatcgcttaatggtggcacaacgggcggt
caaggcggtcaagttgtatacgccaacaccggtacacaaattaacgaagccatgtgtaac
cgcccatctcacgatacgccgttaattatttatgtatccggtaccattaaccacggcaac
accgaaaaggtgtcgggtaattgcgatacaaccggcgacgagattcagtttaaaaaagtt
aaaaacctatcgttaattggtactggtaacggtgcggtgtttgatcaaataggtattcat
ttacgcgaaacctccaatattattctgcaaaaccttcatattaaaaatgttaaaaaatcg
ggttctccaacctccaatggcggcgatgcaattggaatggagtctggcgtatacaatgtg
tgggtggatcactgtgagctagaagcatccggtggtgaaaaagatggttacgattcattg
ctagatatgaaagcaaccacgcagtatgtaaccgtttcttacacctattaccacgattca
ggccgcggtggtttaatggggtcgagcgatagtgacgataccaacacctacgtgactttc
caccacaattactacaaaaatatggattcacgcttaccgcttttacgccacggtactgcg
catgcctttaacaactattacgatggcattaccaaatctggtatgaacccccgtataggc
ggtcaaataaaagcagaaaataactatttcgaaaacgcacacaacccaataggtacgttt
tacacaaacgatatgggttactgggacttaagcggcaatatatttggcaacaacgtaacg
tgggcgtctgcggatgatgaaacccctgcagggccgaatccacaatccacaacgtccatt
catatttcttacccctacagcttggatgacgcaacgtgcgtgccgaagattgtaaaagct
actgcgggtgtgggtaacggtttggctgtgtctaccggtggtagcaattgcggtacttct
agctcttcgtctagcagctcttcgtccagctctacctcgtctaccagttctacatctagc
agttcttcatcatccaatagttcttctggtggctcaggtgtaaacctttcaattggcgca
ggttctgatggtagcagtaaaggtgcgggctcttatggcgatgtgcgcgatggcaatatg
agcacctactgggcaccgagtggcagcactggtcgcgtatctattaagtggagttcggca
acgacggtaagtagcattgttattaaagaagcggctggctttgaaggtaacattactggc
tggcaagttgtaaacaacgagaatggcgcagtattaaaaagcggctctaacgctggcgta
atttctttttctccggtttctactacgaagttaaatttcgaaattacctcttcgaacggc
atgcccacggttgcagaatttgaaacctatagcggcacggttggtggtacttcgtcatcc
agttcttcaagtagttcgtcaagcagttcttcaagcagctcaagttcaacgagcagctct
ggtggttccgcgaatctaggtacctcggtaagtggcgatcaggtttcacttaattggtct
acctcaaacattgatgtgggttcgcagcaagtttatcgcgataccgattcaaacccatct
ggtcgtgtgcgtatctctgcaggcgtttctggtaattcgtataccgattacggcttagct
agcggtacttattactactggataaaaattaccgatcaaaacggtgttgtttacaacaca
aatgccgcagaagcggttgtaggcagccaagcgccaacgacgtttactgcgcaagagtct
gcgggtttctgctctgttaacggttctgttgattccaataacgctggctacactggcgat
ggttttgtaaataccgataacgccagtggcaatgcagcagtttatgccttcaatgcacct
agtgcgggtatgtatagcttgcaggttcgctacgcaaacggttctagtgcacgcccaggt
gatgtgctggtcaacgctggcaatattggaacatttgatttttccagtaccggttcttgg
acatcttgggcaaacagtaatgagttaagtgcgtacttctctgcgggtaacaatactgtt
cgtattcaagctactaactctggcggcttacctaacttagatagtgtttctgtaacgggt
aatgcaccagcggcaggcaactgtaattaa
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