Saccharophagus degradans: Sde_0984
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Entry
Sde_0984 CDS
T00335
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sde
Saccharophagus degradans
Pathway
sde03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sde_0984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sde03021
]
Sde_0984
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_0984
Enzymes [BR:
sde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sde_0984
Transcription machinery [BR:
sde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sde_0984
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sde_0984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ABD80246
UniProt:
Q21M33
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All DBs
Position
1257131..1258120
Genome browser
AA seq
329 aa
AA seq
DB search
MQSAVNEFLTPRHIDVTELGPTRAKVVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVQHEYSAIEGVQEDVIEILLNLKNVAVVMHGKDQAVLSLSKQGPGAVTAGDIQVDHD
IEIKNPELVIANITSDTSLSMRLTVSRGRGYQPVDARATDEDETRAIGRLQLDASFSPVR
RLAYSVESARVEQRTDLDKLVLDLETNGTIDPEEAIRRAATILQQQLAVFVDLEGEKEAE
PEQKEDQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDILASRGLSLGMRLENWPPASLKNND
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtgctgtgaatgaatttttgactccacgtcacattgatgtaaccgaattgggt
ccaactcgcgctaaggtggttttagaaccgcttgagcgtggcttcggtcacaccttgggt
aacgcattgcgtcgtattctcctgtcttcaatgccaggttgtgctgttaccgaagttgaa
attgacggggtgcaacacgaatacagtgccattgaaggtgtacaggaagatgtgatcgaa
attcttctgaaccttaaaaatgtcgctgttgtaatgcacggtaaggatcaagcagttctt
agccttagtaagcaaggccctggtgctgttaccgccggcgatattcaagttgatcacgat
attgaaattaaaaatcctgagttagtaatagctaacatcacttcagatacgtcgttaagc
atgcgtttaaccgtatctcgtggtcgcggctatcagccagttgacgctcgcgcaactgac
gaagatgaaactcgtgctattggtcgtttgcaattagacgcatctttcagcccagtacgc
cgcttggcctactctgttgaaagtgctcgcgtagagcagcgtaccgacttggataagtta
gttttagatttggaaacaaacggaactatcgatccagaagaggcgattcgtcgtgcagca
actatcttgcaacagcagttagcggtattcgttgacttagaaggcgagaaagaagctgag
cctgagcagaaagaagatcagattgatcctgtcttactgcgcccagtagacgatttagag
ctaacagtacgttctgcgaactgtttaaaagctgaaaatatctactacataggtgacttg
atccagcgcacagaagttgagctgcttaagactcctaacttaggtaaaaagtcacttact
gaaatcaaagatatccttgcttcgcgcggtctatctttgggtatgcgtttggagaactgg
ccaccggctagcttgaaaaacaacgattaa
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