Saccharophagus degradans: Sde_1054
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Entry
Sde_1054 CDS
T00335
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sde
Saccharophagus degradans
Pathway
sde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sde_1054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sde03019
]
Sde_1054
03016 Transfer RNA biogenesis [BR:
sde03016
]
Sde_1054
Enzymes [BR:
sde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sde_1054
Messenger RNA biogenesis [BR:
sde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sde_1054
Transfer RNA biogenesis [BR:
sde03016
]
Prokaryotic type
tRNA degradation factors
Sde_1054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
CSD
Motif
Other DBs
NCBI-ProteinID:
ABD80316
UniProt:
Q21LW3
LinkDB
All DBs
Position
1353057..1355870
Genome browser
AA seq
937 aa
AA seq
DB search
MSNKAVPTDPHARREAEKYENPIASRELILEYLEQADGPMSHRALCRALKLTDEDHIEAL
RRRLIAMERDGQLVSNRKGAYGSVNKMDLIRGKVQGHRDGFGFVIPTDGSDDIYVSNREM
RKVFSGDEVLVRADGYDIKGRREGAIVEVLVHNTQTVVGKYFNEGGIHFVRPDNPRIGHD
IMLPADQTNGAKPGQIVEAEVVRQPERRRPPSGSIKAVLGDHMAPGMEIDVAIRSYDLPH
EWPKALEAEIAAYGREVEEADKLNRHDLRKLPFVTIDGEDARDFDDAVYCEPLKSGGWRL
FVAIADVSHYVAVGSELDKEATSRGNSVYFPDYVLPMLPEVLSNGLCSLNPDVDRLCMVC
EMTISAKGKVSSYAFFEAVMHSHARLTYTQVGKVLAERGNKNSGARKQYAKLLPQLDALH
DLYTIFREQRDLRGAIDFETKETRILFDENRKIKDIVPVERNDAHKLIEECMLAANVSAA
KFLSSLEVPALYRVHEGPKAEKIALLHEYLGELGLSMRGSDEVTPQDYQYVLEQIEGRPD
AHIIQMVMLRSMNQAVYQADNKGHFGLAYSEYAHFTSPIRRYPDLLVHRAIRSVIRSNLD
TNKVKRVEQTPVVAKETFYPYTPGDLASLGEQCSTTERRADEATRDVMSWLKCEYLQDKV
GDEFEGVVSAVTGFGLFVELSDVYVEGLVHITALPQDYYHFEPARHRLVGERTRTTFKLG
DSLTVRVVRVDLDERKIDFELIGAKTGRKAKPKASSKAKAMAKDYEAAQARKPRKRKPKA
NSPEPAAPVKKASAASRIIAGVKNAAANLLGRGKAKKAEEGAPIKKAKPSDTKATQERKS
TSVESANTGEKAKPKSRAGRSRPKARSKAQPKKGAKGEASSAPKTRGASAKKTAKPTSNP
KPGAKAAAKPKAKTKPAAKARTTKKPAAKRAAPRKSE
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaacaaggctgtcccgacagacccccacgcacgccgagaggcggaaaaatacgaa
aaccccattgctagccgcgagctaattctggaatacctagaacaggccgatggcccaatg
agtcatcgcgcgttgtgccgcgcattaaagcttacagacgaagaccatattgaagcattg
cgtcgccgcttaatcgccatggagcgcgatggtcagctggtgtctaatcgcaagggcgcc
tacggcagcgtaaacaaaatggacttgatccgcggtaaggtgcaagggcatcgcgacggg
tttgggtttgttatacctaccgatggcagcgacgacatttatgtatctaaccgtgaaatg
cgcaaagtatttagcggcgatgaagtgttggtgcgcgccgatggctacgacataaaaggt
cgccgcgaaggtgccattgttgaggtgttagtacacaacactcaaacagtagtgggtaaa
tattttaatgaaggcggcatacattttgtgcggcctgataacccccgtatagggcacgac
attatgttgcccgcagaccaaactaacggcgcaaaaccagggcaaattgttgaagccgag
gtagtgcgtcagcccgaaaggcgcaggccgccttctggttcaattaaagccgtgttgggc
gaccatatggcgccgggtatggaaatcgacgttgcaattcgctcttacgacttgccccac
gaatggccaaaggcgctcgaggccgaaatagccgcatatggccgtgaagttgaagaggcc
gacaaactaaaccgtcacgacctgcgcaagttgccgtttgtaaccattgacggtgaagat
gcacgagattttgacgatgctgtttattgcgagcctcttaaatctggaggttggcgttta
tttgtggccattgcggatgtatctcactatgttgcggtaggtagcgagctagataaagaa
gcaacttcgcgcggcaattcggtctacttccccgattatgtattgccaatgttgccagag
gttctttccaatggtttgtgctcgcttaaccccgatgtagatcggttgtgtatggtctgc
gaaatgaccataagcgcaaaaggtaaagttagtagctatgcattttttgaagctgttatg
cattcccatgcgcgcttaacttatactcaagttggtaaagttttggcggagcgcggcaat
aaaaatagcggcgcacgcaaacagtacgcgaagttgttgccacagcttgacgcactgcac
gacctttacacaatattccgagaacagcgagatttgcgcggcgcgattgattttgaaaca
aaagaaacgcgcatattgtttgacgaaaatcgaaaaattaaagacattgttcccgttgaa
cgcaatgatgcacacaaacttattgaagagtgcatgcttgccgcaaacgttagtgctgct
aagtttttatcttctttagaagtgcctgcactttaccgtgtgcacgaaggcccaaaagca
gaaaaaattgcattactgcatgaatatttgggtgagctaggcctaagtatgcgcggtagt
gatgaagtaactccgcaagattatcaatatgtgctggagcaaatagagggccgcccagac
gcgcatattatccaaatggttatgctgcgcagtatgaatcaagcggtatatcaagcggat
aataagggccactttggcttggcctattccgaatacgcgcactttacttcgcctattcgc
cgctaccccgatctacttgtgcatcgtgcaattcgcagtgttatccggtctaacttagat
accaataaagttaaacgcgtagagcaaacccctgttgtagcgaaagaaacgttttacccc
tatacgcctggtgatttagcgagcttaggtgagcagtgctccaccacagagcgccgtgcc
gatgaagcaacgcgcgacgtgatgagctggctaaaatgcgaatatctacaagataaagtc
ggcgatgagtttgaaggtgttgtaagcgcggtaactggctttggtttatttgtagagcta
agtgatgtgtatgtggaaggcttggtgcacattaccgcactgccgcaagattactatcac
tttgaacccgctcgacaccgcttagtaggggagcgcacacgcaccacctttaagctgggc
gactcgctaactgtgcgagttgttcgtgtggatttagacgagcgcaaaatcgattttgaa
ttaataggtgcaaaaactggcagaaaagcaaagcctaaagccagtagcaaggccaaggca
atggccaaagattacgaagccgcgcaggcgcgcaagccgcgtaagcgcaaaccaaaagcg
aactcgcccgagcctgcagcacctgttaaaaaagcgagtgccgctagccgtataatagcc
ggtgtaaaaaatgctgctgcaaacttgcttggccgcggcaaagctaaaaaagccgaagag
ggcgcgccaataaaaaaagctaagccctctgataccaaggcgacgcaagagcgaaaatcg
acatcggttgagagcgcgaatacgggcgaaaaagcaaaacccaagtcgcgtgcgggtaga
agtaggcccaaagctcgatcgaaagcgcagcccaaaaaaggggctaaaggcgaagcatcc
tcagcgccaaagactcgcggggcttccgctaaaaaaacagctaaaccaacgtctaatcct
aagccaggtgcgaaagctgcggcaaaacctaaggcaaaaacaaagcctgctgctaaggct
cgcaccaccaaaaaaccggctgctaaacgtgcagctcctagaaaatcagagtaa
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