Saccharophagus degradans: Sde_1256
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Entry
Sde_1256 CDS
T00335
Name
(GenBank) DNA mismatch repair protein MutS
KO
K03555
DNA mismatch repair protein MutS
Organism
sde
Saccharophagus degradans
Pathway
sde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Sde_1256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_1256
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
Sde_1256
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
MutS_C
Motif
Other DBs
NCBI-ProteinID:
ABD80518
UniProt:
Q21LB1
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All DBs
Position
complement(1606793..1609456)
Genome browser
AA seq
887 aa
AA seq
DB search
MNSTSTATPIANENHTPMMQQYLRIKAEHPNEIVFYRMGDFYELFFDDAKKAAKLLDVTL
TARGKSNGEPIPMAGVPYHAAENYLAKLVRLGVSVAIVEQVGDPATTKGPVERKVMRIVT
PGTVSDEALLDETRDNLLVAITLKDERYGISSLDMGSGRFTVFEVADEEALIGEIERLQP
AELLAPELLTVPNIISLRAGYRRRPDWEFEYDTAQRLLTRHFGTQDLSGFGCEDFTAGIS
AAGCLFAYAQETQKTTLSHVAKLVLDNPETKVTLDAATRRNLELDTNLAGTEDNTLFSVL
NTTTTAMGGRLLRRWLHSPLRDIYILNQRQSAIEALLDNYQFEPLRHTLKHISDLERILG
RLALRSARPRDLSRLCASIAEFPAIQQHLNGIDSPLLKKLAKEIREFPDLVDLLSRALME
NPPVVIREGGVIAEGFDEELDELRAISTNAGDYLIKLEEQERAKTGLSTLKVGYNRVHGY
YIEISKSQASSAPTEYIRRQTLKNAERFITPELKTFEDKALSAKSRALAREKGLYDDLIE
TLNEQLRELQVAASGVAELDVLTTLAERSNLLNFCKPELYEGEGIFIEQGRHPVVEQVLD
DPFVPNDLLLDTDQRMLIITGPNMGGKSTYMRQTALIVLLAQIGCYVPASACKLGLVDRI
FTRIGSSDDLAGGRSTFMVEMTETANILNNATRNSLVLMDEIGRGTSTYDGLSLAWACVE
HLANNLHAFTLFATHYFELTGLPKALAGVQNVHLDATEHNDSIVFLHKIQPGPASKSFGL
QVAKLAGIPSNVIADAGGHLRRLEAQPTVDTPHQFPAPEPIALQEPVAEPEPNKPAAAAK
TKPASPQPDLFASAAPSAVEIKLRSINPDNLTPRQALQALYDLKDIS
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtacatctaccgctacgcccattgctaacgaaaaccacacccctatgatgcag
caatacctgcgcattaaggcagagcaccccaatgagattgtgttttaccgtatgggggat
ttttatgagttgtttttcgatgatgcaaaaaaagcggcgaagctattagatgtaaccctt
accgcacgcggtaaatccaacggcgagcctattcctatggcgggcgtgccctaccacgca
gccgaaaactatttggctaagcttgtgcgtttgggggtttcagttgccattgtagagcag
gtaggtgacccagctaccaccaaagggccggtagagcgcaaagttatgcgcattgttacc
ccaggcacggttagtgatgaagcgctgctagatgaaactcgcgataaccttttggtggct
atcaccttaaaagatgagcgctatggcattagctctttagatatgggcagtggccgcttt
accgtatttgaagttgccgacgaagaggcattaataggcgaaattgagcgcttacagcca
gccgaattgcttgccccagaattgcttaccgtacctaatattataagcttgcgtgcaggc
tatagacgccgcccagattgggagtttgaatacgatacagcccagcgcttgctcacccgc
cattttggcacgcaagatttaagcggttttggttgcgaagactttaccgcaggtattagc
gccgcggggtgcttatttgcatatgcacaagaaacccaaaaaacgacgctaagccacgtt
gccaaattagtattggataacccagaaaccaaagtaacactggatgcagcaacacgccgt
aacttagagttagacactaacctagccggcacagaagacaacacattatttagcgtgtta
aatactaccaccacagcaatgggtgggcgcttattgcgccgctggttacattcaccactg
cgcgatatttacatacttaaccagcgccaaagcgctatagaagcgctgttagataattat
caatttgaaccgctacgtcacaccttaaaacacattagtgacttagaacgtattttgggc
cgcttggctttgcgctctgctcggccgcgcgacttgtcgcgtttatgtgcatctattgcg
gagtttcccgcaattcaacagcatttaaacggtattgatagcccgctactaaaaaaacta
gcaaaagaaattcgagaattcccagacctagttgatttgcttagccgtgccttaatggaa
aacccaccggtagttattcgcgaaggcggggttattgcagaagggttcgatgaagagcta
gacgagctgcgcgcaattagtacaaatgccggtgattatttaattaagttagaagaacaa
gagcgtgctaaaaccggtctttctacgcttaaagtgggctacaaccgcgtacacggttac
tacattgaaattagtaaatcgcaagctagctcggcgccaacagaatatattcgcaggcaa
acacttaaaaatgccgagcgttttattacgccagaattaaaaacttttgaagataaagcc
ttgtctgcaaaaagccgtgcgctcgcgcgtgaaaaaggcttgtacgatgatcttatcgaa
accctcaacgagcaattgcgcgaactacaagttgcggcttctggcgttgccgagctagat
gtattaaccacattagccgagcgttcaaacctattaaacttttgcaagccagagctgtac
gaaggcgaaggcatttttatcgaacaaggtcgccaccctgtggttgaacaggtgttagat
gacccgttcgtacctaacgacttactactagataccgaccaacggatgctaatcattacc
ggccccaacatgggcggtaagtcgacttacatgcgacaaacagcgcttattgtgctgctg
gcgcaaattggctgctacgtaccggccagcgcttgcaagctgggcttggtagatcgcata
tttactcgtattggctcatcagacgatttggcaggcggccgctctacttttatggtggaa
atgaccgaaaccgccaatattctaaacaacgctacccgcaacagccttgtgcttatggat
gagattggtcgcggtaccagtacctacgacggcctgtcgctggcgtgggcatgcgtggaa
catctcgctaacaacttgcacgcatttaccctgttcgccacccattactttgagctaacc
ggcttgccgaaagcattagctggcgtgcaaaacgtacatttggatgcaaccgagcacaac
gactcgattgtttttcttcacaaaatacaacccggccctgccagcaagagctttggtttg
caggtggcaaaactagctggtattccttccaacgtgattgccgacgcgggcggtcacttg
cgcaggttagaggcccagccgacggtagacacgccgcaccaattcccggcccccgagcct
attgccttgcaagagccggttgcggaaccagaacccaacaaaccagctgctgctgccaaa
accaaaccggctagcccgcaacccgatttgtttgcgagcgcggccccttcggctgtggaa
ataaaactgagaagcattaaccccgataatttaaccccgagacaagctttacaggcctta
tacgatttaaaagatataagttag
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