Saccharophagus degradans: Sde_1291
Help
Entry
Sde_1291 CDS
T00335
Name
(GenBank) ABC transporter related
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
sde
Saccharophagus degradans
Pathway
sde02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Sde_1291
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sde02000
]
Sde_1291
02044 Secretion system [BR:
sde02044
]
Sde_1291
Transporters [BR:
sde02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
Sde_1291
Secretion system [BR:
sde02044
]
Type I secretion system
Adhesin protein transporter
Sde_1291
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
Peptidase_C39
SMC_N
AAA_21
ABC_ATPase
SbcC_Walker_B
AAA_29
Motif
Other DBs
NCBI-ProteinID:
ABD80553
UniProt:
Q21L76
LinkDB
All DBs
Position
1654333..1656468
Genome browser
AA seq
711 aa
AA seq
DB search
MDKTEDTVGSKDPLLLSLMAIARYEHVACSDTMLVSGLPLHEGRLTPELLVRAASRIDMK
ASVVERTIDQISNLVLPAILILKDNQALVLLDIADNNSVAQVYCPEQDAEQEISIPDLLQ
QYTGLAIYIKPETHYEARALHDIAPKKAHWFWGTLSHSWRIYRDVLVASFLINLFALANP
LFVMNVYDRVVPNNAIETLWVLALGVSVVYIFDYILKTLRVHFIEVAGKKSDVLLSAYIF
ERVLGAKYDQHPPSVGAFTGQLRDFDSVRNFITATSVTAFVDLPFTVLFLVVIGYLGGPI
VWIPIVIIPLIIIFSLVVQAMLNKAVANTFVASAQKNATMVEAITNLSLVKVLNAEGKIL
RNLEKAVGLLAYWGVKTRVLSNSATGFAGFMQQMASVLVVIVGVYLISAGELTMGGLIAC
VLLTTRSLMPLAQVAGLLVQFQQSKMALTSLEEIVNRQQERPNDRHFIKRIKLQGNVEFK
GVNFVYPGDDQPTLKDVSFSLKEGEKVALIGRLGSGKSTMNNLIAGLYQPTSGAILIDGI
DIKQIDPAELRANLGYVPQDSSLFYGSIKDNIAYRDVYVDDQEIIRVAEVAGVSAFSNLH
PHGLARMIGERGDNLSGGQRQAISIARGLVNSPALVLLDEPTSAMDNASEAKLMENLKEE
LADKTVIMVTHKTSLLRLVDRVIVMDSGRIVADGPKDTVLEALKKGQVRVS
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttggataaaacagaagacactgtcggttcaaaagaccctcttttactgtcgttgatggct
attgctcgctatgagcacgtcgcttgttcagacaccatgcttgtgtctgggttgccattg
catgaaggccgtcttacgccagagttgctagttcgcgctgcaagtcgcatagatatgaaa
gcatcggtggttgaacgcactatcgatcaaatatccaacttggtattgcccgccatactt
attcttaaagacaaccaagcattggtgttgttagatattgcagataacaactctgtcgca
caggtatattgccccgagcaggatgctgaacaagaaatatccattcccgacttactccag
caatacacaggcttagccatatatataaagcccgaaacccattacgaagcccgcgctctt
cacgatatagcacctaagaaagcacactggttttgggggacgctaagccatagctggcga
atttaccgcgatgtattggtggcttcatttctaattaacctctttgcgcttgcgaacccg
ctgtttgtaatgaatgtgtacgatcgggtggtacccaataatgcaatcgagacgttgtgg
gtgctagcacttggtgtatcagttgtttacatttttgattacatcttaaaaacgttacgg
gtgcattttatagaggtggcgggtaaaaagtcggatgtactgctgtcagcgtatattttt
gagcgagtgcttggcgcgaagtatgatcagcatcctccttctgtaggggcttttactggg
cagctgcgcgattttgattctgtaagaaactttattactgcaacgtcggttaccgcgttt
gtcgacttgccctttaccgtgctctttttggtggttatcggctatttgggcggcccaatc
gtatggattcccatagtaattattccacttattattattttttccttggtcgtgcaggcc
atgctcaataaagcggttgccaacacctttgtcgcatccgcccaaaaaaatgccactatg
gtggaagctattactaatttgtcgttggttaaggtgttgaacgccgagggcaaaatactg
cgcaacctagaaaaggctgttgggttgttggcttattggggtgttaaaacccgcgtgctt
tctaatagcgcgactggctttgctggttttatgcagcaaatggcttctgttttggtggtt
attgttggtgtgtatttaattagcgccggcgaattaaccatgggtggtttaattgcatgt
gtgttgctaaccacgcgttctcttatgcctttagcgcaggtagctggcttattggttcaa
ttccagcagtcgaaaatggcgttaacctcacttgaagagattgtaaataggcagcaagag
cggccaaacgacagacactttataaaacgtattaaattgcagggtaatgtggagtttaaa
ggggtgaactttgtttaccctggcgatgatcagccaacactcaaagatgtaagcttttcg
ttaaaagagggggagaaggtagcgttaattggtcgattggggtctggtaaatcgacaatg
aataatttaatagctggtttatatcagcctaccagtggtgccattcttattgatggcata
gatattaagcaaatagaccccgcagagctgcgagccaatcttggttatgtccctcaagat
agctctttattctatggctcaataaaagacaacattgcttatcgcgatgtatacgttgac
gatcaagagatcatccgcgtggcagaagtggctggtgtatctgcatttagtaatcttcat
ccccatggtttggctcgaatgataggcgagcgtggagacaatttatccggcggtcagagg
caggcgatatctattgcgcgaggcttggtgaatagccctgcattggtgcttttagatgag
cctacatctgcaatggataatgcgagtgaagccaagttaatggaaaaccttaaagaagag
ctggccgataaaacggtaataatggttactcataaaacgtcattgcttcgattggtagac
agggtaatagtaatggatagtggccgcatagttgccgatggtccgaaagataccgtgtta
gaagcacttaaaaaggggcaggtccgtgtcagctaa
DBGET
integrated database retrieval system
