Saccharophagus degradans: Sde_1335
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Entry
Sde_1335 CDS
T00335
Name
(GenBank) DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
sde
Saccharophagus degradans
Pathway
sde03030
DNA replication
sde03430
Mismatch repair
sde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sde_1335
03430 Mismatch repair
Sde_1335
03440 Homologous recombination
Sde_1335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sde03032
]
Sde_1335
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_1335
Enzymes [BR:
sde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sde_1335
DNA replication proteins [BR:
sde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sde_1335
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sde_1335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_5
AAA
RuvB_N
AAA_16
AAA_5
AAA_22
AAA_2
AAA_18
AAA_30
AAA_14
PIF1
AAA_19
AAA_7
nSTAND3
Mg_chelatase
TsaE
AAA_28
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABD80597
UniProt:
Q21L32
LinkDB
All DBs
Position
1730631..1732703
Genome browser
AA seq
690 aa
AA seq
DB search
MSYQVLARKWRPRTFREMIGQEHVLRALINALDHGRLHHAYLFTGTRGVGKTSIARILAK
CLNCETGVSSEPCGECSACVEISEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRY
KIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKNMSP
ERIVGHLSHILEKEVIPFEESALWQLARSADGSMRDALSLTDQSISFGGGKVSEDEVASM
LGTIDHKLVQNLVGALIAGDGSQILTSVAKFAEHAPDFDVALADLITLLHRIAIAQALPD
ALDNSYGDRTQILEFASKLAPEDVQLFYQTALIGRRDLSLSPDPRSGFEMTLLRMLAFKP
QGVADVPTQRLQAQPASAPASSSDVASVAAPAAPTAQAAPQPSSNVEPAPAQAAPEQTEP
SPPAQTSPPQQNVAPNTVEDNSPPADYYDNMPPYEEAQEPVKKPQAEPQQAQAEVPASEP
APLGPMHTVVTAAESTQAVAEPEVNTSAPAKTPADALREQVKAIVGKEGISAPPKPAQQL
KNTPAAPINAAPVVTTPISLEELTPSHWVSVYNQLNVKGILQSTAANTVLIGREDNHLDF
ALDEQKSSLFDPSHSDRLSALLSDYFGVPIKAAIHLQNLPGDLETPAAYAIRIDQEKRVA
AIQNMYDDPVVQTLQQQFNATLVEETVTYQ
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcaggtacttgcccgtaagtggcgcccgcgcactttccgcgaaatgattggc
caagagcacgttttacgcgcgcttattaacgccctcgatcacggacgtctgcatcacgct
tacctgtttaccggcacgcgcggcgtgggcaaaacctccatagcacgtattctagctaag
tgtttgaattgcgaaactggggttagttccgagccatgtggtgaatgcagtgcctgtgtg
gaaatcagtgagggccgctttgtcgaccttatcgaggtggatgcggcatcgcgcaccaaa
gtagaagatacgcgcgagctgctcgacaacgtgcaatatgcacccacgcgcggccgctac
aaaatatacctcatcgatgaggtgcacatgctctctaaccacagttttaacgctttgctt
aaaaccttagaggagccgccagagcatgtgaagtttctactggcaaccacagacccgcaa
aaactgccggtaactatattatctcgatgtttacagtttaatctcaaaaatatgagcccc
gagcgcatagtgggccatttgtcgcatattttagaaaaagaagttatcccctttgaggag
tctgccctgtggcagttggcgcgctcggcagatggcagtatgcgcgatgcactaagctta
accgaccaaagtatttcgtttggcggtggcaaggttagcgaagacgaagtcgcttccatg
cttggcaccattgaccacaaactagtgcaaaaccttgtgggcgcgttaatagccggggat
ggcagccaaattttaacgtcggttgctaaatttgccgaacacgccccagacttcgatgta
gctctggccgacctcataacactgctgcaccgcattgctattgcgcaagcgctacccgat
gcgctagataacagctacggcgatcgcacccaaatattggagtttgcgagtaagcttgcc
cctgaagatgtgcagctgttttatcaaacggcccttattggccggcgtgatttgtcactg
tcgcccgacccgcgcagcggctttgaaatgactttgctgcgaatgctggcatttaagcca
caaggtgtggccgatgtgcctactcagcgcctacaggcacagcccgccagtgcgccggct
agtagttctgacgttgcttctgttgcagctcctgcggctccgactgctcaagcagcaccg
cagccctcgtctaatgttgagcctgcacctgctcaagcggcccccgagcagactgagccc
agcccgccagcgcagacgtctccgccacagcaaaacgttgcgccaaacacggtggaagac
aattcgccacccgcagattactacgacaatatgccgccttacgaggaggcccaagagcct
gtaaaaaagccccaagctgagcctcaacaggctcaggcagaggtgcccgcaagtgagccc
gcgccgttagggccaatgcatactgtggtaaccgctgcagagtcaacccaagccgttgcc
gagccggaagtaaatacttcggcccctgctaaaacgccggcggatgctctgcgtgagcag
gtaaaagccattgtgggcaaggagggcataagtgccccgccaaaacctgcacagcaattg
aaaaatacccccgccgcgcccataaatgcagcgccggtagtgactacgccaataagctta
gaagagctaaccccatcgcattgggtaagtgtatacaaccagctaaatgttaagggtatt
ttgcaaagtactgctgcaaacactgtgctaattgggcgtgaagataatcatttagatttc
gcgttagacgagcaaaaaagtagcctcttcgacccgagccacagcgataggttatctgcg
ctattaagcgattattttggtgtgcctatcaaagcagctatccacctgcaaaacttgccg
ggtgatttagaaacaccagcggcttacgccatacgtatagatcaagaaaaacgcgtggca
gccatacaaaatatgtacgatgaccctgtagtgcaaacactacagcaacaatttaatgca
acactcgttgaagaaactgttacctaccaatag
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