Saccharophagus degradans: Sde_1338
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Entry
Sde_1338 CDS
T00335
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sde
Saccharophagus degradans
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sde03016
]
Sde_1338
Enzymes [BR:
sde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sde_1338
Transfer RNA biogenesis [BR:
sde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sde_1338
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Herpes_TK
Motif
Other DBs
NCBI-ProteinID:
ABD80600
UniProt:
Q21L29
LinkDB
All DBs
Position
1733684..1734844
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AA seq
386 aa
AA seq
DB search
MADDLVKQPIHWISTVEELEECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVNDGEANY
LLDPTTIDDFSPFAEILVDDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFVNLG
YSMGFARMVQGVLGVELPKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLLTELKAK
ERLDWVFGEGKTIVKNFSDNLDPKLSYLRVKNAWKLNAKQLAIFQNLCEWRELTAQKRDK
PRNRIVKENTLFAMALKRPKHISQLRNYEGMSDRVIRTDGEYLLRLIERADKIEASDLPE
LLPKPLTSAENKRVKALRAEVQKVADEIGIASEILARKKEYDYIVRDYLARGEWSYPEGF
PQWRQALLTDLINETIKVEPADEVDS
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
ttggcggacgatttagtaaaacagcccattcactggataagtaccgtcgaagaattggaa
gagtgctgcgagcgctggcaaagtaaaaagttacttgctgtagataccgaatttatgcgc
agccaaacctattaccctattgcggggttaattcaggttaacgatggcgaagctaattat
ctgttagacccaaccaccatcgatgatttctcgccgtttgcagagattttggtcgacgac
gatattattaaagccattcactcatgctcagaagatcttgaagtgttttatcactctttt
ggttttttaccgcagcgtctgtttgatacgcaaatagccggagcttttgttaatttaggc
tattccatgggttttgcgcgcatggtgcaaggtgtcttgggggtggagctacccaaaaca
gaaacgcgttctgattggctgcagcgccctttaagtgttgcgcaaaaacactacgctgca
ttagatgtagaatatttgtatttattggccggtaaactactcacagaactaaaggccaaa
gagcgtttagattgggtatttggtgaaggcaaaactatagttaaaaactttagcgataac
ctcgaccctaagttgagttacttacgcgttaaaaatgcatggaagttaaacgccaagcag
ttagctatatttcaaaacttgtgtgaatggcgcgagctaaccgcacaaaagcgcgataaa
ccgcgcaatagaattgttaaagaaaatacgctttttgccatggctctaaaacgccctaag
catatatcgcaattgcgtaattacgaaggtatgagcgatcgggttattcgcaccgatggt
gaatatttactgcgccttattgagcgcgcagacaaaatagaagcatcagatttacccgag
ttgctacccaagcctcttacttctgcagaaaataagcgcgttaaagcgttgcgtgcagaa
gtacaaaaagtagcagatgaaattggtattgcctcagaaatactggcccgtaaaaaagaa
tacgactatatagtgcgggattacttggccagaggcgagtggagctaccctgaaggcttt
ccccaatggcgtcaagcactgctaaccgatttaataaacgaaaccattaaagttgaaccc
gcagatgaagttgatagttga
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