Saccharophagus degradans: Sde_1619
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Entry
Sde_1619 CDS
T00335
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sde
Saccharophagus degradans
Pathway
sde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sde_1619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sde03019
]
Sde_1619
03009 Ribosome biogenesis [BR:
sde03009
]
Sde_1619
Enzymes [BR:
sde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sde_1619
Messenger RNA biogenesis [BR:
sde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sde_1619
Ribosome biogenesis [BR:
sde03009
]
Prokaryotic type
rRNA processing factors
Sde_1619
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABD80881
UniProt:
Q21K98
LinkDB
All DBs
Position
complement(2080750..2083656)
Genome browser
AA seq
968 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRLREQKKANIYKGRITRVEPSLEAAFVDY
GSERHGFLPLKEISREYFAKQPKDIDGRIRIQDVVKEGMEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIDGDDRTELKDALSQIDVPAGMGIIVRTAGVGRRAEE
LQWDMNYLAQLWASIKTAAEEKTAPEFLFQESNVIIRAIRDYLRPDIGEVIVDNQDAYNL
ATAFVEQVMPNYRSKVKLYEEPLPLFNRFQIESQIETAFEREVKLPSGGSIVIDVTEALI
SIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQREVE
NRMRDALEMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSIA
LSILRLVEEEAQKERSAEIRAVVPVAVATYLLNEKRKVISGIEERQKTRIVIIPSEKMTT
PHFDVQRLRDDDVVSSEISYKIEVPQGEDEEKIQDDAAALAKLPRPAVQAIPPAQPAPEA
PKPDSLLTKILKKLKELFKTDDKKRKNTSKNSRGQQRRRGNNSQNNRNRNRNRNGRGNDN
RNKNRDDEITDNLSSRTKSDQSQQGQGPSSDDNRPDRGNRKRGNRRRNNNRRNDQDRNDS
PESNNDEQQNNNQPQEQNNAPKEQGPNRRPNGRRGRGGRERKREPVPQAAEESVTKDDSA
LAAEVTSAIDTAEKAFATNSPAELKQAKSEAKEQAKSEAKEQAKSEAKEQAKQERAPQEA
AITAETPSEAKQPEATATAAEAKPEPSEKAKASQAPQAAEASDTTETVAETKVEAPSAEA
APAKEAPVETAAETASEAETAEPVAAAETAEVAEVAVAEATEEASEAKEELAPAQAVRKQ
YSRATNDPRATPKPVANTLVSNVVTQIRMSRPLDTTQPANILRNPRDLSRPANDPRLKRN
IEEVASDA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaatgcaactcagcccgaagagttgcgcgtagctttagtcgat
ggccaatggctttacgatttagacatagaaaaccgccttagagagcaaaaaaaggccaat
atttacaaaggccgaatcacccgcgttgaaccctccttagaagccgcatttgtcgattac
ggctctgaacgtcacggctttttaccccttaaagaaatttctcgcgaatactttgccaag
cagcctaaagacattgacggccgcatccgcatccaagatgtggttaaagaaggcatggaa
gttattgttcaagtagataaagaagagcgcggcaacaaaggcgcggcacttactaccttc
attagcttggctgggcgctacctagtacttatgcccaataacccacgcgcaggcggtatt
tcacgtcgcattgacggagacgatcgcacagagcttaaagatgcattgagtcaaattgat
gtaccagcaggcatgggcattattgttcgcaccgctggcgtaggccgcagagccgaagag
ttgcagtgggatatgaactacctcgctcagctttgggcatccattaaaaccgctgccgaa
gaaaaaactgcaccggaattcctattccaagaaagtaacgtcattattcgtgctattcgc
gattacttgcgcccagacataggcgaagtaattgtagataaccaagatgcgtacaacctt
gccaccgcatttgttgagcaagtaatgcccaactaccgcagcaaagtgaagctttacgaa
gagcctctccccctattcaaccgctttcaaatcgaatcgcaaattgaaactgcttttgag
cgcgaagtgaaactaccttctggcggctctattgttattgacgttaccgaagcgcttatc
agtatcgatattaactcttcacgcgccaccaaaggcggcgatatcgaagaaacagcccta
caaactaacctagaagcagcagatgaaattgcccgtcaattgcgcttgcgcgacatgggc
ggcctagtagttatcgactttatcgatatgcagcctgttcgcaaccagcgcgaagttgaa
aaccgcatgcgcgacgccctagaaatggaccgcgcccgcgtacaagttggccgcatttct
cgctttgggttactggaaatgtctcgccaacgcctgcgcccttctcttggtgaaaccaca
tctaaagtgtgccctcgctgtagcggtcaaggcaccattcgcggcaccaaatctatcgcg
ctctctattttgcgcttagtagaagaagaggctcaaaaagagcgcagcgcagaaattcgc
gcagttgtgccggttgccgtagcaacctacctgctgaacgaaaagcgcaaagtgatttct
ggcatagaagaacgccaaaaaacacgtattgttattatccctagcgagaagatgacaacg
ccacacttcgacgtacagcgcctgcgcgatgacgatgtagtttcttcagaaataagctac
aaaattgaagtgccgcaaggcgaagacgaagaaaaaatccaagatgatgctgcagcactg
gctaaattgccacgcccagcggtacaggctattccccctgcgcaacctgcgccagaggct
ccaaaaccagacagcctattaactaaaatacttaaaaagttaaaagagctatttaaaacg
gacgacaaaaagcgcaagaacaccagtaaaaactcgcgtgggcaacagcgtcgtcgtggc
aacaatagccaaaacaacagaaacagaaatagaaatcgcaacgggcgcggcaacgataat
cgcaataagaatcgcgatgacgaaattaccgacaacctaagctcacgcaccaagtctgac
caaagccaacagggccagggccccagctcggacgataacaggccagatcgcggcaaccgc
aagcgcggtaaccgcagacgcaacaacaaccgtcgcaacgaccaggatcgcaacgattca
ccagagtctaacaacgacgagcaacaaaacaacaaccagcctcaggagcagaataacgcc
cctaaagagcaaggccctaaccgtcgcccgaatggacgcagaggccgtggtggtcgtgag
cgcaagcgcgagccagttccacaagccgccgaagaatcagtaacaaaagatgattccgca
ctagctgccgaagtgacttcagcaatagacactgcagaaaaagcattcgcgaccaatagc
cctgctgaacttaagcaagctaaaagcgaagctaaagagcaggctaaaagcgaagctaaa
gagcaggctaaaagcgaagctaaagagcaggctaaacaggaacgagcgccacaagaagca
gctataacagcagaaacgcccagcgaagctaagcaaccggaagctacggctaccgctgca
gaagccaagccagagccaagcgaaaaagctaaagcaagccaagcgccgcaagccgctgaa
gcgagcgatacaactgaaaccgtagctgaaaccaaagtagaagcacctagtgccgaagct
gcaccagcgaaggaagcacctgtagaaactgccgcagaaaccgctagcgaagctgaaact
gcagagccagtagctgcagccgaaaccgctgaggttgcagaagttgcagtggctgaagct
actgaagaggcctctgaagcaaaagaagagctcgctcctgctcaagcagtgcgcaagcaa
tactctcgcgcaactaacgacccaagagcgacgcctaaacctgttgccaatacgcttgta
tctaatgtggttacccaaatacgtatgtcgcgaccactagacacaacccaaccggctaac
attttgcgcaacccgcgcgatttaagtcgccctgcgaacgatccgcgcttaaaacgcaat
atagaagaagtagcgagcgacgcataa
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