Saccharophagus degradans: Sde_1753
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Entry
Sde_1753 CDS
T00335
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sde
Saccharophagus degradans
Pathway
sde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sde_1753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_1753
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sde_1753
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sde_1753
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_5
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABD81013
UniProt:
Q21JW6
LinkDB
All DBs
Position
2237679..2239679
Genome browser
AA seq
666 aa
AA seq
DB search
MSKLFKVKSKYTPAGDQPTAIEGLVKGIEAGLAHQTLLGVTGSGKTFTIANVIERIDRPT
LVMAHNKTLAAQLYGEFKDFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNDHIE
QMRLSATKALMERKDAIVVATVSAIYGLGDPESYLKMILHLNRGDTIDQRQILRRLAEMQ
YTRNDIDFQRGTYRVRGDVIDIFPADSELEALRVELFDEEVDNLSIFDPLTGEVFRKVPR
FTVYPKSHYVTPRNKIIDAIDEIKEELAERLQQLRENDKLVEAQRLEQRTRYDLEMMQEL
GYCNGIENYSRYLSGRDSGEPPPTLFDYLPAEALLVIDESHVTVPQIGAMYKGDRSRKET
LVEYGFRLPSALDNRPMRFDEWEARAPQMIFVSATPGKYEAEHQGQVVEQVVRPTGLLDP
IIEVRPATSQVDDAMSEITKRVALEERVLITVLTKRMAEDLTDYLQEHGVRVRYLHSDID
TVERVEIIRDLRIGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGR
AARNVNGKAILYAERITDSMRRAIDETERRRQKQIDHNEKHGITPIGITKSIADIMEGAR
APGSKSSSRKRVADKTKDYEVDMNSSKDIWKTIQVMEKDMFQAAKDLEFEKAAQLRDKIN
SLKAKI
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaactttttaaagttaaaagtaagtacactcccgcaggcgatcagcccacagcg
attgagggcttggttaaaggtatagaagcggggctagcgcaccaaacattacttggtgta
acaggctcaggtaaaacttttactattgccaatgttatagagcgcatagataggcccacg
cttgttatggcgcacaacaaaaccttggcggcacagttatacggggagtttaaagacttc
ttcccagataatgctgttgaatattttgtatcttattacgactactaccagccagaggct
tatgttccgtcttcggatacatttatcgataaagatgcctcggttaacgatcatatagaa
caaatgcgcttatcggctaccaaagccttaatggagcgtaaagatgccattgtagtggcc
actgtgtctgccatttacggtttgggcgacccagaatcgtatttgaaaatgattttgcat
ttaaatcgtggcgataccattgatcagcgccaaattttgcgtcggttagccgaaatgcaa
tacacccgcaatgatatcgactttcagcgcggtacgtatcgtgtgcgcggtgatgtaatt
gatatttttcccgcagattcagagctagaagcgttaagagtagagctgttcgatgaagaa
gtggataacctttctatattcgacccccttaccggtgaagttttccgcaaggtgccgcgt
tttacggtataccccaaaagccattacgtgacgccgcgcaataaaattatcgacgctatt
gatgaaataaaagaagagttagccgagcgcttacagcagttgcgcgaaaacgataaattg
gtggaggcgcagcgcttagagcagcgtacccgctacgatttagaaatgatgcaagaactg
ggttactgcaatggcatagaaaactattcccgttatttgtcgggtcgtgactctggtgag
ccgccacccactttattcgattacctacctgcagaagccttattggtaattgatgaatct
cacgtaaccgtgccgcaaattggcgccatgtacaaaggcgaccgctcgcgtaaagaaacc
ttggtggaatatgggtttagattgccctcggcgctagataaccgcccaatgcgttttgat
gagtgggaagcgcgtgcaccacaaatgatttttgtgtcggccacacccggcaagtacgaa
gcagagcatcaaggccaagtggtggagcaggttgtacgaccaacaggcttgttagacccc
atcatcgaagtgcgccccgctactagtcaggtggatgacgccatgtctgaaatcaccaag
cgtgtagcgttggaagagcgggtattaattaccgtgcttaccaaacgtatggcagaagat
ttaactgattacctgcaggagcacggtgttcgtgtgcgctacttgcattcagatatcgac
accgtagaacgggtagaaattatccgcgatttacgtattggcgaatttgatgtgctggta
ggtatcaaccttttgcgagaaggtttagatatgcccgaagtgtctttagtggctattttt
gacgctgataaagagggtttccttcgctccgatcgttcacttattcaaaccattggtcgc
gctgcacgtaacgtaaacggcaaggcgatactttacgccgaacgcataacggactctatg
cgcagagctatagatgaaaccgagcgtcgccgccaaaaacaaatagaccacaacgaaaag
catggcataacgccaataggcataactaaaagtattgccgatattatggaaggggcgagg
gcgccaggttcgaaaagtagtagccgcaagcgcgtagccgataaaacgaaagattacgaa
gtggatatgaacagcagcaaagatatttggaaaacaatccaagtaatggagaaagatatg
ttccaggcagccaaagatttagagttcgaaaaagctgcccaactgcgcgataaaatcaat
tcacttaaagcaaaaatataa
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