Saccharophagus degradans: Sde_1783
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Entry
Sde_1783 CDS
T00335
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sde
Saccharophagus degradans
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sde03032
]
Sde_1783
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_1783
Enzymes [BR:
sde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Sde_1783
DNA replication proteins [BR:
sde03032
]
Prokaryotic type
DNA Topoisomerases
Sde_1783
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sde_1783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
ABD81043
UniProt:
Q21JT6
LinkDB
All DBs
Position
2274869..2277580
Genome browser
AA seq
903 aa
AA seq
DB search
MEKSLVIVESPAKAKTINKYLGNKFVVKSSVGHIRDLPTSGGAKSTVDPKERAKQAALTR
KMSPEEKAIHREKKSREQLINRMGINPEKNWEARYEILPGKEKVVEELKKLAEEADTIYL
ATDLDREGEAIAWHLQETIGGDPDRYRRVVFNEITKTAIQKAFEKPSMLDLNRVNAQQAR
RFLDRVVGYMVSPLLWEKIARGLSAGRVQSVAVRLVAEREREIRAFIPEEYWDIAAQLDT
PKGERAGFDVKKYQGNVFRPVNEKEAMEAVERLKASAFKVTSREDKPTQSKPTAPFITST
LQQAASTRLSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSAEAVETCRGFILDTFGEKYL
PEAPISYSSKEGAQEAHEAIRPSDVTRRPDSLTDMERDAQRLYTLIWNQFVACQMTPAQF
TSSNIVVTASDYELRARGRVIRFDGFLRVMPAIAKKDEDKILPDVKVGETLNLHQLDPSQ
HFTKPTARYTEASLVKELEKQGIGRPSTYAAIISTIQDRGYVHVENRRFYADKMGDIVTE
RLTESFSDLMDYSFTAKMEESLDVVAEGKKDWLSLLNNFYDDFMQKLDAAKAADTGMRRN
EPVETNIECTNCGRNMQIRTGTTGVFLGCSGYNLPPKERCKNTMNLVAGEEAVNIDEDDE
AESKQLRQKRRCKICNTAMDSYLLDETRKLHICGNNPDCSGYEVEAGSFKIKGYEGPVIE
CDKCGQDMQLKSGRFGKYFGCTSESCSNTRKLLRNGEAAPPKMDPVKMPELKCEKVDDTY
VLRDGASGIFLAASQFPKNRETRAPLVKELLPHKDEIDPKYDFLMKAPLQDNNGLDTIVR
YSRKTKEQYVQTEVDGKATGWKAFYEGGKWVISDEQKPKKPAKKAATKTKAKPKAKAKAK
KDE
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagtcattagtaattgtggaatcgccggccaaggctaaaacaattaacaagtat
cttggcaataagttcgtagtgaaatccagcgtaggccatatacgcgatttacctactagc
ggtggagctaagtctacggttgatcccaaagaacgcgctaagcaagctgcgttgactaga
aagatgtcgcccgaagaaaaagcgattcatcgagaaaagaaatcacgcgaacaacttata
aaccgtatgggaattaacccagaaaaaaactgggaagcccgttacgagattctgcctggc
aaagaaaaagttgtagaagaactaaaaaaactggctgaagaagccgacaccatctacctc
gcaacggatttggatcgcgagggagaggccattgcatggcacttgcaagaaactattggt
ggtgacccagatcgctaccgccgagttgtgtttaacgaaattaccaaaacggctatccaa
aaagcgtttgaaaaacccagcatgctcgacctaaatcgagtgaatgcacagcaggcgcgg
cgctttttagatagggttgtgggttacatggtttccccgttgttgtgggaaaaaattgca
cgcggcttatcggccggccgagtacagtctgttgctgttcgattagttgccgagcgcgag
cgagaaattcgagcgtttattccagaagaatattgggacatagccgcgcagttggataca
ccgaagggtgagcgcgctggcttcgatgtaaaaaaatatcaaggtaatgtcttccgccca
gttaacgaaaaagaagccatggaggctgttgagcgcttaaaagcgagcgcgtttaaagtt
acctcccgcgaagacaaacccacacaatctaaacctactgccccttttattacttctaca
ttacagcaggctgcatccactagacttagttttggtgtaaaaaagaccatgatgatggcg
cagcgtttgtacgaagctgggcatatcacatacatgcgtaccgactctactaacttaagt
gcagaagcggttgaaacctgtagagggtttattctagatacgtttggtgaaaaatattta
cccgaagcccccatttcatactcaagcaaagagggcgcgcaagaggcgcacgaagcgata
cgtccatcggatgtaacgcgtcgcccagatagcctgacagacatggagcgcgatgctcag
cggctttatacgctaatttggaaccaatttgttgcgtgccagatgactccggcacaattc
accagctcgaacattgtggtgacagcctcagattacgaattgcgagccagaggccgcgtt
attcgtttcgatggctttttacgggtaatgccagccattgctaaaaaagatgaagataaa
attttacccgacgtaaaagtgggtgaaactcttaatcttcatcagcttgacccaagtcag
cattttaccaagccaacggcgcgttacaccgaagccagcttggtaaaagagttagaaaag
caggggataggtcgtccatccacatacgcggccattatttctaccattcaagatcgcggt
tacgtacatgttgaaaaccgtcggttctatgccgataaaatgggcgacattgttaccgag
cgcttaacggaaagctttagcgacctaatggattacagctttaccgcgaaaatggaagag
tctctagacgtagtggccgaaggtaaaaaagattggctatcgctgctaaataatttttac
gacgacttcatgcagaagttggacgcggctaaagcggcagataccggcatgcgtcgcaac
gagccagttgaaaccaatattgaatgcacgaattgcggccgcaacatgcaaatccgcact
ggtaccactggtgtatttttgggttgctctggctacaacttaccgcccaaagaacgctgt
aagaacaccatgaacttggtggctggcgaagaagcggtaaacattgacgaagatgatgag
gcagaatccaagcagctgcgtcaaaaacgccgatgcaaaatttgtaatactgcaatggat
agctacttactggatgaaaccagaaagctgcacatttgtggtaataacccagattgttct
ggctacgaagtagaggccggtagctttaaaattaaaggttacgaaggcccggttattgaa
tgcgataagtgcggccaagacatgcagttaaagtcgggtcgatttggtaaatactttggc
tgcacaagcgaaagctgcagcaatactagaaagctattgcgtaacggtgaagctgcgccg
cccaaaatggacccagtaaaaatgccagagcttaaatgcgagaaggtagacgatacctac
gtattgcgcgatggtgcttcgggcattttcttggctgcgagtcagtttcctaaaaacaga
gaaacgcgagcgccactagtaaaagagctgttgccacacaaagacgaaatagaccccaag
tacgactttttgatgaaggcaccactgcaggataataacggcttggatactattgttcgc
tacagccgtaaaaccaaagagcagtatgtgcaaaccgaagtagacggtaaggccacaggc
tggaaagcgttttacgagggtggtaaatgggtgattagcgatgagcaaaaacctaaaaaa
cccgctaaaaaagcagctacaaaaacgaaagctaagccgaaagcaaaagccaaggctaaa
aaagacgaatag
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