Saccharophagus degradans: Sde_1886
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Entry
Sde_1886 CDS
T00335
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sde
Saccharophagus degradans
Pathway
sde00061
Fatty acid biosynthesis
sde00071
Fatty acid degradation
sde01100
Metabolic pathways
sde01212
Fatty acid metabolism
sde02024
Quorum sensing
sde04146
Peroxisome
Module
sde_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Sde_1886
00071 Fatty acid degradation
Sde_1886
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Sde_1886
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sde_1886
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sde01004
]
Sde_1886
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sde04147
]
Sde_1886
Enzymes [BR:
sde01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Sde_1886
Lipid biosynthesis proteins [BR:
sde01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Sde_1886
Exosome [BR:
sde04147
]
Exosomal proteins
Exosomal proteins of breast milk
Sde_1886
Exosomal proteins of breast cancer cells
Sde_1886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ABD81146
UniProt:
Q21JI3
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All DBs
Position
2381162..2382763
Genome browser
AA seq
533 aa
AA seq
DB search
MVPRFNTAVELLEFAFKNYPQNRAYTCAGHTLTFDEIEKLSAEFAYYLQNVLKLEPGDRI
AMQLPNVLQYPVALYGAIRAGLVVVNTNPLYTAPEIEHQLNDSGAKALVVLSNIAANAAS
IIKNTKVEHVIVTNFADLHPAPKRWIINAVVKHVKKMVPKFHFESQHAFRAAVGHGKTSF
TKHAKTSDDLLVLQYTGGTTGVAKGAMLTHGNLTSNVWQMIEHMPNAYVPGKETFLACLP
LYHIYAFNLHALSAFCYGEHNILIPNPRDLQSLVDAIKNEDLTVMIGINTLFNALCRFEP
FLALNFDRLKITSSGGMALTMDAAHTWEKITGCKVVEGYGLTEASPVVSGNPSDAIQLGT
IGVPLPETQVKIVDDMGNELPQGETGELCVKGPQVMPGYWNKPEETKKVLSDGWLRTGDM
ALIQADGYLKIVDRKKDLIIVSGFNVYPNEVEDVITQHPAVIEAAAVGMADAESGERVKV
FAVVSDTNVTERELVDFCKKSLTGYKVPKKIVFREALPKTNVGKILRRELRDE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
gtggtacctcggtttaatacagcagtagagctgctggaattcgcatttaaaaactacccc
caaaacagagcatatacctgtgctggtcacacgttaacttttgacgaaatagaaaagtta
agtgccgagtttgcttattatttgcaaaacgtacttaagctagagcctggcgatcgcata
gccatgcaactgcctaacgtattgcagtaccccgtagcattgtacggtgctattcgtgcg
ggtttggttgtggttaataccaaccctttatataccgcgccagaaattgaacaccagcta
aatgatagcggtgcgaaggcattggttgtgctttctaatattgctgccaatgcagcaagt
attattaaaaacaccaaagtcgagcacgtaattgttaccaatttcgctgatttacaccca
gcccccaagcgctggattattaacgctgttgttaaacatgttaaaaaaatggtgccaaaa
ttccattttgaatcacaacatgcgtttagagcggctgttggtcacggtaaaaccagcttt
actaaacacgctaaaacgtcagatgatttgcttgtactgcaatatacaggcggtactaca
ggtgtggccaagggggctatgctcacgcacggcaatttaaccagcaatgtttggcaaatg
attgagcatatgccaaatgcctatgtgccgggtaaagagacctttttagcttgcttgccg
ctttatcacatctatgcatttaacctacacgcgctgtcggctttttgttacggtgaacac
aatattcttataccaaacccgcgcgatttacagagtttggtcgatgctattaaaaatgaa
gacctcacggtgatgatcggcattaatactttgtttaatgcgctgtgccggtttgaaccc
tttttagccttaaattttgatcgcttaaaaataacttcttctggcggaatggcattgact
atggatgctgctcacacttgggagaaaattaccggctgtaaagtagtcgaaggttacggt
ttaacggaggcttcccctgttgtgagtggtaatccgtctgatgctattcagttgggtaca
attggtgtgccgttaccagaaacgcaggttaaaattgtagatgatatgggtaacgagtta
cctcaaggtgaaaccggcgagctttgtgtgaaaggcccacaggtaatgcccggttactgg
aataaacctgaagaaactaaaaaagtgctgtcggatggctggttgcgcacaggcgatatg
gcgcttattcaggcagacggttacttaaaaatagtagaccgtaaaaaagaccttattatt
gtgtctggctttaatgtttaccctaatgaagttgaagacgttattactcagcacccagca
gtaatagaagctgcagctgtaggcatggctgatgctgaatcgggagagcgggttaaagta
tttgcagttgtaagcgatactaatgtgaccgagcgggaactagtcgatttttgtaaaaaa
agcttaactggctataaagtgcccaagaaaatagtattccgcgaagcattacctaaaacc
aatgtgggtaaaattctacgccgagaattgcgcgacgagtaa
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