Saccharophagus degradans: Sde_2191
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Entry
Sde_2191 CDS
T00335
Name
(GenBank) sigma-54 factor, interaction region
KO
K10943
two-component system, response regulator FlrC
Organism
sde
Saccharophagus degradans
Pathway
sde02020
Two-component system
sde02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sde_2191
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sde_2191
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
sde02022
]
Sde_2191
02035 Bacterial motility proteins [BR:
sde02035
]
Sde_2191
Two-component system [BR:
sde02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
Sde_2191
Bacterial motility proteins [BR:
sde02035
]
Flagellar system
Flagellar assembly proteins
Others
Sde_2191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
HTH_30
AAA_2
AAA_16
AAA
AAA_19
HTH_24
FleQ
MCM
Mg_chelatase
AAA_3
HTH_11
OKR_DC_1_N
nSTAND3
AAA_22
AAA_7
MerR
HTH_23
AAA_PrkA
HTH_28
ATPase
GlnR_1st
PDE8A_N
Motif
Other DBs
NCBI-ProteinID:
ABD81451
UniProt:
Q21IM8
LinkDB
All DBs
Position
complement(2786848..2788341)
Genome browser
AA seq
497 aa
AA seq
DB search
MTNPAQSTGQLLSEEYAREIKIMVVEDDLDLREAVVDTLDLAGFSVVQAASAEQALELLE
ASPDQDLIISDVNMGAMSGHDLLRKVRTDYPQIPVVLVTAYASINDSVVAMKEGAVDYLV
KPFETQVLIDTVKKVVGGNTSASDEPIANAPGSRQLLQLACRVAQSDSTVLVIGESGTGK
EVLARYIHTKSKRADMPFVAINCAAIPENMLEAMLFGHEKGAYTGAYSSAPGKFEQANGG
TLLLDEISEMDIGLQAKLLRVLQEREVERLGGRKSIKLDVRVIATSNRDMRREVANGKFR
EDLYFRLSVLPLQWAPLRDRREDIVPLAESLLSRHAAKQHRQGVQLSDDTKHTLETYPWP
GNVRELDNVMQRALILQPGNIIHSPDLGLQTETLYSDKPSLVDDIATYSQNAIAAIAQPR
AVEVAPKELDIPEPEGAVLGHDLRKREFEIIVQTLRDERGSKKNTAKKLGISPRTLRYKL
ARLKEEGYDLQQALSYS
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgactaacccagcgcaatccacaggccaattgctaagcgaagaatacgccagagaaata
aaaataatggtagtagaagacgatttagatttacgcgaagccgtggtcgacacgctagat
ttagccggttttagtgttgtgcaagccgcaagtgccgagcaggccttagagttgttggaa
gctagccctgatcaagatttaataatatctgatgtgaatatgggcgctatgagcggccat
gatttattgcgtaaagtgcgcaccgattacccgcaaataccggtggtgttagtgaccgcc
tacgcaagcatcaacgattccgtagtcgcaatgaaagagggcgcagtcgattacttagta
aaacctttcgaaacacaagtactcatcgacacagtaaaaaaagtagtgggtggcaataca
agtgcaagcgatgagcccattgcgaatgcgccgggtagccgtcagcttttacagcttgct
tgtcgagtagcgcaatccgattcgaccgtgttagtcattggtgaatctggcactggtaaa
gaagtattggcgcgttatattcacaccaaaagtaagcgagccgatatgccgtttgtggcg
atcaattgcgctgccataccagagaacatgctagaggctatgttatttggccacgagaaa
ggcgcctacactggggcgtacagctcggcacccggtaaatttgagcaggctaacggtggt
acattgctattggacgaaatctccgaaatggatataggcttgcaagcaaagctgttgcgg
gtgctacaagagcgagaagtagagcgcttgggcggtcgtaaaagcatcaagttggatgtg
cgcgtaatcgccacctctaaccgcgatatgcgcagagaagtggccaacggaaaatttcgc
gaagatttatattttaggctaagtgtactgcctttacagtgggcgccactacgcgaccga
cgcgaagatatcgtcccgctggcagaatcgttacttagccgtcatgcggccaagcaacac
aggcagggcgtacagttatcggatgatacaaaacacaccttagaaacctacccgtggccg
ggcaatgtacgcgagctagacaatgtaatgcagcgggcgcttattttgcagccaggcaat
attattcattcgccagacctagggctacaaacagaaacactttacagtgacaagccttcg
ttggtggatgatattgccacctatagccaaaacgccattgccgctattgctcagccgcga
gcagtcgaggtggccccaaaagaattggatataccagaaccagaaggtgcggtacttggt
cacgatttacgcaaacgtgaattcgagataatcgtgcaaacattaagagacgagcgcgga
agcaagaaaaataccgctaaaaagttaggtattagcccccgtacgcttcggtataagtta
gctagattaaaagaggaaggttacgacctgcagcaggcattaagttactcctag
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