Saccharophagus degradans: Sde_2194
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Entry
Sde_2194 CDS
T00335
Name
(GenBank) sigma-54 factor, interaction region
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
sde
Saccharophagus degradans
Pathway
sde02020
Two-component system
sde02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sde_2194
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
Sde_2194
02025 Biofilm formation - Pseudomonas aeruginosa
Sde_2194
09142 Cell motility
02040 Flagellar assembly
Sde_2194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sde03000
]
Sde_2194
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sde02035
]
Sde_2194
Transcription factors [BR:
sde03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sde_2194
Bacterial motility proteins [BR:
sde02035
]
Flagellar system
Flagellar assembly proteins
Others
Sde_2194
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
HTH_50
Mg_chelatase
AAA_16
AAA_7
nSTAND3
HTH_30
AAA
SLFN-g3_helicase
MJ0235
Motif
Other DBs
NCBI-ProteinID:
ABD81454
UniProt:
Q21IM5
LinkDB
All DBs
Position
complement(2790554..2791993)
Genome browser
AA seq
479 aa
AA seq
DB search
MLGDKKILIVEDDATRLHDLVVIIDFLGESPIQTAFSSWQDIAAQAADDEVGMIILGNTH
GGETLKQHLEGIKNTYELKPVAVVGEYGDINPEWDPYLRHMAIGTLELPITYNALIDAMH
RAQRLNVARDAARGGLASRPTHLFRSLVGTSREEQTVRTMMDQVADTDVTVLIQGESGTG
KEVVARNLHYNSPRRDKPFVPVNCGAIPAELLESELFGHEKGAFTGAINARAGRFELAEG
GTLFLDEIGDMPLHMQVKILRVLQEKSYERVGGNKSYPTDVRIIAATHRDLDVMIADGSF
REDLYYRLNVFPIEMPPLRERAEDIPLLINELVNRLESEHRGSIRFNSAAILSLCRHPWP
GNVRELANLVERMAIMQPYGVVGVQDLPAKYRHVELEDDDPLDDLESMPVKTTMVGAGDV
TLLPDGGIDLKEYITGLEQSLIQQALDDCGGVVARAADRLTIRRTTLVEKMRKYGLQRS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgttaggtgacaaaaaaatactcattgtcgaagacgacgcgactcgattacacgattta
gtggtgataatcgactttttaggggagagccccatacaaacggcgttttcgagctggcaa
gatattgccgctcaggccgctgacgacgaagtcggcatgattattcttggcaatacccac
ggcggggaaacgttaaaacaacatttagagggtataaaaaacacttacgagttaaagcct
gttgccgtagtaggcgaatatggcgatataaaccccgaatgggacccgtacctgcgccat
atggccattggtaccctagagctgccaattacctacaatgccttaatagatgccatgcat
agggcgcagcgattgaacgtcgcgagggatgccgcgcgcgggggcttggcatctagacca
acccatctgttccgcagtctggtgggcaccagtcgcgaggagcaaacggtaaggacaatg
atggatcaggttgccgataccgatgtaactgtacttattcagggcgaatcgggtacgggc
aaagaagttgtggcacgcaaccttcactataattccccgcgtagagacaagccatttgtg
cctgttaactgcggtgctattccggcagagctgctagagagtgagttgtttgggcatgag
aaaggcgcgtttacaggggctattaacgcgcgagcggggcgttttgaactcgctgaaggc
ggcacattatttttagatgaaattggcgatatgccactgcacatgcaagtaaaaatattg
cgtgtactgcaagagaaatcctacgagcgagtagggggtaacaaatcgtaccccaccgat
gtgcgcattattgccgctacccaccgcgatttagatgtaatgattgcagatggaagcttt
cgcgaagatttatactaccgtttaaatgtgtttcccatagaaatgccaccattgcgcgag
cgcgcagaagatattccgctacttataaacgagttagtaaatcgcttagaaagcgaacac
cgtggctccatacgctttaactctgcggcaattctatctttgtgtcgccacccttggccg
ggtaatgtaagagagctggccaacttggtggaacgcatggctattatgcaaccttatggc
gttgtgggtgtgcaagatttacctgctaagtatcgtcatgtagagcttgaagatgatgac
ccgctagatgacctagaaagcatgccagttaaaacgaccatggttggtgcgggtgacgtg
accttgttgcccgatggtggaatagatttaaaggaatatataaccggcttagagcaaagt
ttaattcagcaagcgctagatgattgtggcggtgtggtggcgagagcggccgataggctt
acaattcgtcgaaccactttggtggagaaaatgcgtaaatacgggttgcagcgcagctag
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