Saccharophagus degradans: Sde_2390
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Entry
Sde_2390 CDS
T00335
Name
(GenBank) TonB-dependent receptor
KO
K02014
iron complex outermembrane recepter protein
Organism
sde
Saccharophagus degradans
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sde02000
]
Sde_2390
Transporters [BR:
sde02000
]
Other transporters
Pores ion channels [TC:
1
]
Sde_2390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
OMP_b-brl_3
STN
Motif
Other DBs
NCBI-ProteinID:
ABD81650
UniProt:
Q21I29
LinkDB
All DBs
Position
3029518..3032847
Genome browser
AA seq
1109 aa
AA seq
DB search
MSHPNWRKNNVRSSIQQACIPQAAERNGRTIITAVTLGALISFSALAQAETDTLEKVVRF
DIPQQRADISLTEFAKQANITLIFPFDDVKQLQTNSLQGEYSITDAVALLLRDTQLFVNI
GADGQLTILMEHDLGEIDSMHKKKLLSSAVIAALSSLTGANAIAQQTSAPAGQVEEVLVT
GIRASLQRAMDVKRESGGVVDAISSEDIGKFPDTNLAESLQRITGVSIDRSGGEGQQITV
RGFGPQFNTVLVNGRQIASEDTSRAFNFDTVASELVKRLDVYKTSSATLQSGGIGSTVNI
TTARPLDIGEFKVAGSAKALMDGNSEETSPQISGMISNTFADDTFGVLFALSHQERSTRL
NQAQMDGWLENVGVPNPMTESGADWDGNVFSPRNYDHKVTFEDRKRTNANLVLQYAPSDD
LTITGDLLYTDFDINTDTTSYGHWFTAPNIQGVGDDGSLFDTDGERRRPIVDENGTLIDL
YQEVGLATDMHAKTFDRLTETTAIGLNAEWQANDNLQLVFDLSHSTSEREANNGGGDQLS
LIGYANRVRFQVDNNILPLASMFAEANPNIYSGQQEIDGAIIDDSDGFAGYDPAITPAGV
NDHLNKDNSRAHVMLRRGWAVEDAVTQFRMDGLWDEGNDTGLTKAKFGFQHSTETKALER
WDNEGVGIHCTYCGYPDAPTIPADAQYIFDAGSDFLGDVSGSGRMPTQWLAHDGEANFAF
LESYYASTNTDTISFDAVKRNNSYEITEATTAAYLELEFAGEIADMRIEMTSGVRLEETT
TDVDGTTAPVSGLTILDETEMLAQYGAADSISLSTDYSSILPNMSIKLDISDNLVARAAA
SKTITRPTLNSMSPVTVITTTRQGGDLTSASGNPALEPFESDNLDLSLEWYYDDTSYVSA
GYFKKDVANFIVNAQESRTFTLPDGSLLTDPSTGSDSGAADAGDDVAVFTNTLPNNGENA
TVDGVELALQHAFGETGFGIIANATIVTSDAELDPDDLSQVFALPGLSDSFNLVGYYEQG
PFQARLAWNWRDEFLQSLTQGQGDGPTIVEAYQQWDLSGSFDINDNVSIFVEGINLTEEY
VHKRGRYANQLLLIEDSGRRLALGVRASF
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaccccaactggcggaaaaataatgttcggtcgtctatacaacaagcctgtata
ccgcaggctgctgagagaaacggacggacaataattactgcagtaaccttgggtgctctc
atttctttttctgctttggcgcaagccgaaacagacaccctagaaaaagtcgtacgtttc
gatattcctcagcaacgagcagacatatcgcttactgaatttgctaagcaagctaacatt
actctcatctttccattcgatgacgtaaaacaattgcaaacaaattctttacaaggcgaa
tactccataactgatgctgtagcacttttactgagagatactcagctatttgtgaatatt
ggtgcggatggtcagctcaccattcttatggaacatgacctaggggaaatcgactccatg
cataaaaagaaattgttatctagcgcggttatcgccgcattatcttcactcaccggtgca
aatgctattgcacaacaaacctccgcacccgctggccaagttgaggaagttttggttaca
ggtattcgcgcaagcttacagcgcgcgatggatgtaaaacgcgaaagcggcggcgtagtt
gatgctatttcatcagaagacattggtaaattcccagacaccaaccttgcagaatcgctg
caacgtattacgggtgtatccattgaccgctcaggcggtgaaggtcaacaaattactgtt
cgcggttttggtccacaatttaatactgtacttgttaatggtcgccaaatagcctcagaa
gatacatcgcgcgcctttaactttgacacggttgcttcagaattagttaaacgtttagat
gtttataaaacatcctcggctactctccagtctggcggtattggctcaacggttaacatt
acaactgcgcgcccattagatattggcgagtttaaagttgctggtagtgccaaagcactt
atggatggcaacagcgaagaaacctcaccacaaatatctggcatgattagcaacaccttt
gccgacgatacttttggtgtgctatttgcgctttcacatcaagagcgcagcacccgctta
aaccaagcgcaaatggatggctggttagaaaacgttggcgtgcccaaccccatgacagaa
agcggtgccgactgggatggcaacgtattctcgccacgtaactacgaccataaagtcacg
tttgaagatcgcaaacgcactaatgcaaatttagtattgcaatacgcgccctccgacgat
ttaactattaccggtgatttgctttataccgatttcgacataaacacagataccacatcg
tacggccactggtttaccgcgccaaacattcaaggcgtaggtgacgacggctcattgttc
gataccgacggcgagcgccgccgcccaatcgttgacgagaacggcacgcttatcgattta
taccaagaagtaggtttagcaaccgacatgcacgctaaaaccttcgaccgcttaaccgaa
acaaccgctattggtttaaacgcagaatggcaagctaacgataacctacagttagtgttc
gatctttcgcactctacttctgagcgcgaagcgaacaatggtggcggcgaccaactctca
cttattggctacgccaaccgagtacgctttcaggtagataacaatatactgccgctggcc
tctatgtttgccgaagcaaaccccaatatttatagcggccaacaggaaatagacggcgca
attattgatgatagcgatggatttgccggttacgacccagccattacccctgctggcgtt
aacgaccacctaaacaaagacaatagccgagctcacgttatgttgcgccgaggttgggcg
gtggaagatgccgttacccaatttcgcatggacggcctgtgggatgaaggtaacgacact
ggtttaaccaaagcaaaatttggctttcagcactctaccgaaaccaaagcacttgagcgc
tgggataacgaaggcgttggtattcactgcacctactgcggctacccagatgccccaaca
atacccgccgatgcgcaatatatttttgatgcaggcagcgactttttaggcgatgtaagt
ggcagcggacgtatgccaacccaatggctagcgcacgacggcgaagccaactttgcattc
ctagaaagttattacgcaagtaccaatacagatacaattagttttgacgcagtaaaacgc
aacaattcttatgaaataacagaggcaactaccgccgcatatttagaattagaatttgct
ggcgaaattgctgatatgcgtatagaaatgacttctggtgtacgcttagaagaaaccact
acagatgtagacggcactactgcgccagtttctgggctaaccattttagatgaaaccgag
atgttggcacagtacggcgccgcggatagcattagcttaagcacagactactcttctata
ttacctaacatgagcatcaagttagatatttcagataacttagtcgcccgcgccgccgcg
tccaaaaccatcactcgaccaaccctaaacagtatgtcgccggtcacagttatcaccaca
acacgtcaaggtggcgatttaacatctgcaagtggtaacccagcactagaaccctttgaa
tccgacaacttggatttaagtttagagtggtactacgacgacacgagttatgtgtctgcc
ggttacttcaaaaaagacgtagccaactttatcgtaaatgcgcaagaaagcagaaccttt
acactccctgatggttcgttactcaccgatccgtcaaccggttccgattctggtgcagca
gatgcaggcgatgacgttgctgtattcacaaacacgttacccaataacggtgaaaacgct
acagtggatggcgtagagctagcgttgcaacatgcgtttggcgaaacaggcttcggtatt
attgccaacgcgaccatagtaacaagcgatgcggagctagacccagacgatttaagccaa
gtatttgcgctgccaggcttaagtgactcgtttaacttagttggctactacgaacaaggc
cccttccaagcacgactcgcgtggaactggcgtgacgagtttttacaatcgcttacccaa
ggccaaggggacggcccaactattgttgaggcgtatcaacaatgggacctaagtggtagc
ttcgatattaacgataacgtgagcatattcgtagaaggtattaacctaaccgaagaatac
gtacacaaacgtggccgctacgccaaccaactgcttctaattgaggacagtggacgtcgc
ttggcactgggtgtgcgcgcaagcttctaa
DBGET
integrated database retrieval system
