Saccharophagus degradans: Sde_2533
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Entry
Sde_2533 CDS
T00335
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
sde
Saccharophagus degradans
Pathway
sde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sde_2533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_2533
Enzymes [BR:
sde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sde_2533
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sde_2533
RecFOR pathway proteins
Sde_2533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_22
AAA_16
AAA_3
Mg_chelatase
nSTAND3
AAA_14
TIP49
AAA_17
RNA_helicase
AAA_2
ABC_tran
AAA_28
AAA_18
Rad17
NB-ARC
AAA_24
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABD81793
UniProt:
Q21HN6
LinkDB
All DBs
Position
complement(3204865..3205899)
Genome browser
AA seq
344 aa
AA seq
DB search
MIEQDRIIDANAKSREEQIDRAVRPKSLKEYIGQPVVREQMEIFIGAAQARGDSLDHTLV
FGPPGLGKTTLANIIAAEMGADLKSTSGPVLEKAGDLAALMTNLEPGDVLFIDEIHRLSP
VVEEILYPAMEDFQLDIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVQR
LEFYNIEDLTHIVERSASLMGVAMDTPGAREVAKRSRGTPRIANRLLRRVRDYAEVKSDG
TVTAQIADLALNMLNVDEHGFDHMDRRLLLTLIEKFGGGPVGVDSLAAAISEERDTIEDV
LEPYLIQQGFIMRTPRGRMATQLAYQHFGLNVPAALKQDSLPGI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgattgagcaagaccgaattattgatgctaacgccaaaagccgcgaagagcagatagac
cgagctgtacgcccgaagagcttgaaagaatatattggtcagccggttgtgcgcgagcag
atggaaatatttatcggcgccgcgcaagcgcgcggtgatagtttggatcatacgcttgta
tttgggccgcctgggctgggtaaaacaacgctggcgaatattatcgccgcagaaatgggg
gcggatctaaagtccacatctgggcccgtactcgagaaagctggcgacctagctgctcta
atgacaaacttagagccgggcgacgttttatttattgatgaaatacatcgattaagtccg
gtggtagaagaaatattataccccgcgatggaagactttcagttggatatcatgattggt
gaggggccagccgcgcgctctattaagcttgaattaccgccgtttacgcttgtcggggca
actacgcgtgcagggttgcttacttcccctttgagggatcgattcggaattgttcagcgt
ttagagttttacaatattgaagatctcactcatattgttgagcgttctgcgtccttgatg
ggggttgctatggatactcccggtgcaagggaggttgctaaacggtctcgtggaacaccg
cgcattgccaatcgtttactgcgtcgcgtacgagattatgctgaagttaaatcagatggt
acggtaacagcgcaaattgcagatcttgctcttaatatgctcaacgttgacgagcacggc
tttgatcatatggatcgcaggctattgctcacgcttatagaaaaatttggtggcggaccg
gtgggtgtcgatagcctggcagcagcaattagtgaagagcgcgacacgatagaagacgtg
cttgagccgtatcttattcagcaggggtttattatgcgtactccgcgtggtcgaatggct
actcaattggcatatcaacatttcggtttgaatgtgcctgcagcgctaaagcaagattcg
cttcctggcatataa
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