Saccharophagus degradans: Sde_2709
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Entry
Sde_2709 CDS
T00335
Name
(GenBank) transcription termination factor NusA
KO
K02600
transcription termination/antitermination protein NusA
Organism
sde
Saccharophagus degradans
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sde03021
]
Sde_2709
03009 Ribosome biogenesis [BR:
sde03009
]
Sde_2709
Transcription machinery [BR:
sde03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Sde_2709
Ribosome biogenesis [BR:
sde03009
]
Prokaryotic type
rRNA transcription factors
Sde_2709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
HHH_5
S1
KH_NusA_C
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
ABD81969
UniProt:
Q21H60
LinkDB
All DBs
Position
complement(3437188..3438669)
Genome browser
AA seq
493 aa
AA seq
DB search
MKKEILLVADAVSNEKGVDKGIIFEAIELALASATKKRYDEDADIKVTIDRKDGDYVTVR
RWLVVDDDTLAELGTQFTTEEAIEKDPSLKPGDVYEEVIENVDFGRIAAQTAKQVIVQKV
REAERAQIVDEYRGRVGELIAGTVKKVTRDNIIVDLGGNAEGLLPREELVGREVFRMNDR
VRAVLADVRPEARGPQLFLSRACPEMLIELFKIEVPEIAEEVISLNAAARDPGSRAKIAV
ATNDGRIDPVGACVGMRGSRVQAVSNELGNERIDIILWDDNPAQFVINAMAPAEIESIVV
DEEAGSMDVAVAEDNLAQAIGRGGQNVRLASELTGWEINVMSVDQWNEKQAAEAGSARDV
FINALDIDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEEIAEELRNRAKDALLTQA
LAGEEKNQPADDLVNMEGMDDALAQTLAARGVICMEDLAEQAVDELMEIDGMDEERAAAL
IMKAREPWFADEA
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaatattgctcgtcgcggacgctgtatcaaacgaaaaaggcgttgataaa
ggtattatattcgaagcaatcgaattggccttggcatcagccaccaaaaaacgttacgac
gaagatgctgatattaaagtaacgattgaccgcaaagatggcgattatgtaactgttcgt
cgctggttagttgtagacgacgataccttggccgagcttggaactcagttcactaccgaa
gaagctattgagaaagatccatcgctcaagcctggcgatgtgtacgaagaagttattgaa
aacgtagattttggtcgaattgcagcgcaaaccgctaagcaagttattgttcaaaaagta
cgtgaagcagagcgcgcacaaattgttgatgagtaccgcggccgtgttggtgaattaatt
gccggtaccgtaaagaaagtgactcgcgataatattattgtggatcttggcggcaatgct
gaaggtttgcttcctcgcgaagagttagttggccgtgaagtatttcgtatgaacgatcgc
gtgcgtgccgtactggctgatgtgcgtccagaagcgcgtggcccacagctctttttgagc
cgtgcatgcccagagatgttaatcgagctgtttaaaatcgaagtgcctgaaatagcagaa
gaagttatttctttaaatgctgcggcgcgcgacccaggctctagagcaaaaattgcagta
gctacaaacgacggccgtatagacccggttggtgcttgtgttggtatgcgcggttcgcgt
gtacaggcagtatctaacgaattgggtaacgagcgtattgatattattctatgggatgat
aacccggctcaatttgttattaatgcaatggcgccggcagaaattgaatctattgttgta
gatgaagaagccggctctatggatgtagctgtagccgaagataatttagcgcaagctatt
ggtcgcggcggtcagaatgtgcgcttggcgtcagagcttaccggttgggaaatcaacgtg
atgagcgttgaccagtggaatgaaaaacaagccgccgaggcgggcagtgcacgcgatgtg
tttatcaatgcacttgatatagatgaagatgtggccgacgtgttggtggatgaaggcttt
accaccttagaagaagtcgcgtacgtgcctttggaagaatttttggccattgaaggcttt
gatgaagaaattgcagaagagctacgcaatagagcgaaagatgccttgttgactcaagca
ttggctggcgaagagaaaaatcagcctgctgatgatttggttaacatggaaggcatggat
gacgctttggctcaaactcttgcagcgcgcggtgtgatctgtatggaagatctcgcggag
caggcggttgatgagctgatggaaattgacggcatggacgaagagcgcgcggctgcgtta
attatgaaagcccgcgagccctggtttgcagacgaagcctag
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