Saccharophagus degradans: Sde_3200
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Entry
Sde_3200 CDS
T00335
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sde
Saccharophagus degradans
Pathway
sde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sde_3200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sde03019
]
Sde_3200
Enzymes [BR:
sde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sde_3200
Messenger RNA biogenesis [BR:
sde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sde_3200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABD82457
UniProt:
Q21FS2
LinkDB
All DBs
Position
complement(4076735..4078285)
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AA seq
516 aa
AA seq
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MAAILYPARPLVDADPNMKFAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMA
AAQTGTGKTAGFTLPILEILAEGIENGRKVKPNQARALVLTPTRELAAQVGENVALYGKY
LPIKSTIVFGGVKINPQMMKLRGGVDILVATPGRLMDLYNQRAVKFDQLEMLVLDEADRM
LDMGFIHDIRKIMAILPKKRQNLMFSATFSQDIRELAKSIVNNPVEITVNPPNSTATRVK
QWICPVDKKEKPALLTHLIKTNKWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQ
GARTKALAEFKNGTVKILVATDIAARGLDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGA
EGNAVSLVSADEFQMLKEIERLTKTLLTREVIQGFEPDHNLPESRLDTRPIRPNKPKRPK
PAGGASNRSGGGNSGGGNNRAKPRGDDSKAANADTPWAGKAKPRKPRPAGAKPATQGKPA
GARNGNTGPKGKGGPAGGGARRPTNKPSGAQGAARS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
gtggctgcaatcctgtatcctgcgcgccctttagttgatgcagaccccaatatgaaattt
gccgaacttggcctttgtcccgccattcagaaagccgtactcgaacaaggctacgaaacc
cctaccccaattcaagcgcaagccattccccctgtattagaagggcgcgatgtgatggcc
gctgcgcaaaccggtacgggtaagacggcggggtttacattgcccattttagaaatactg
gcagaaggcatagaaaacggccgtaaagtaaagccgaatcaggcacgtgcgttagtactt
actcctacgcgagagcttgcagcacaggtaggtgaaaacgttgccctatacggcaagtac
ttgcctattaaatctaccatcgtatttggcggcgtgaaaattaacccgcaaatgatgaaa
ttgcgcggcggtgtcgacattttagtggccacgccaggccgtttgatggacctatacaat
cagcgtgcagtgaagtttgatcagctagaaatgctggtgttggacgaagccgatcgcatg
ctcgatatgggctttattcacgatattcgcaaaattatggctattttaccgaagaaacgt
caaaacctgatgttttcggcgacgttctcgcaagatattcgcgaattagctaaaagtatt
gtgaataacccagtagaaattactgtgaacccgcccaacagcaccgcaacccgcgtaaaa
cagtggatttgccccgttgataaaaaagaaaagcccgctttgcttacccatttgattaaa
accaataagtggcagcaagtgttggtgttctctcgcaccaagcatggcgcaaataaatta
gttaaacaattggaaggcagtggcctgcgagcagcggcgattcacggcaacaaaagccaa
ggcgcacgcactaaagcgttagccgagtttaaaaatggcacggtaaaaattcttgtagcc
accgatattgccgctcgcggtttggatattgatcaactaccgcaagtggtgaacttcgac
ttacctcaggttgctgaagattacgtgcatcgaattggccgcacaggccgtgctggcgca
gagggcaatgccgtttcgctagtgagtgccgacgaatttcaaatgttaaaagagattgag
cgtttaactaaaacgttgctcactcgcgaagttattcaaggctttgagccagaccacaat
ttacctgagtctcgattagatacccgccccattcgccccaataagccgaaacggcccaag
ccagcaggtggtgcttcgaaccgcagtggcggtggtaacagtggcggtggcaataatcgc
gctaagccgcgtggcgatgacagcaaagcggccaatgccgataccccgtgggcaggcaaa
gcaaagccgcgcaagcctcgccctgcaggtgctaaacccgctacacaaggtaagcctgcc
ggcgcgcgcaatggcaatacaggcccaaaaggtaagggtgggccagccggtgggggtgcc
agacgaccaactaataagcctagcggtgcacaaggggctgctagaagttag
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