Saccharophagus degradans: Sde_3337
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Entry
Sde_3337 CDS
T00335
Name
(GenBank) penicillin-binding protein 6. Serine peptidase. MEROPS family S11
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
sde
Saccharophagus degradans
Pathway
sde00550
Peptidoglycan biosynthesis
sde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Sde_3337
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sde01002
]
Sde_3337
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sde01011
]
Sde_3337
Enzymes [BR:
sde01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Sde_3337
Peptidases and inhibitors [BR:
sde01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
Sde_3337
Peptidoglycan biosynthesis and degradation proteins [BR:
sde01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
Sde_3337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
ABD82592
UniProt:
Q21FD7
LinkDB
All DBs
Position
complement(4264763..4265944)
Genome browser
AA seq
393 aa
AA seq
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MLTSMRSFVVCLLATICVPVFAAQVIVPAPPELSAKAYLLIDADTGKVIVESNADEVMEP
ASLTKMMTSYIVSEEIESGRLTEDALVLVSDDAWRRGGSASGSSTMFLDPRSEVRVIDLL
RGVIIQSGNDASIALAQHIAGDESAFADVMNQQAQLLGMNSTNFENATGWPAEGHVTTAR
DLAILARALVNDHPEHYALYSEKYFKYNGINQPNRNRLLFRDDSVDGMKTGHTESAGYCL
VASAKQDDMRLISVVLGTKSDSARTQDSQKLLSYGFRYYKTYTLYNEGEAISDARVWKGL
TDKVSLTVNSDIEVTIPRGAHKSVKAVTRVDSIIEAPVAPGQILGSLLLKLEDEVLAEYD
LVAATKVDEAGFFARTWDSIMLMFEDDEEAASE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgctgacctcaatgcgctccttcgttgtttgcttactcgccacgatttgtgtacctgta
ttcgcagctcaagttattgtgcctgcgcccccagagctttctgctaaagcgtatttattg
atagacgccgataccggcaaggtaattgtagagagcaatgccgatgaggtaatggagcct
gcaagccttaccaaaatgatgaccagctatatcgtttcggaagaaatagaaagcggccgc
ttaacagaagatgcgttagtgctagtgagtgatgacgcatggcgtcgcggtggttcggca
agcggtagctcgactatgttcctcgaccctcgcagcgaagtacgcgttattgacttgttg
cgcggtgtaatcattcaatctggtaacgatgccagtatcgcgctagcgcaacacatcgct
ggcgacgaatctgcctttgccgatgtaatgaaccagcaggcgcagttattaggcatgaac
agcaccaactttgaaaatgccacaggctggccagccgaagggcacgtaactactgcccgc
gacctcgctatacttgcgcgtgcgctcgttaacgaccacccagagcactacgcgctttac
tccgaaaaatactttaaatacaacggcataaaccagcctaaccgcaaccgcttactgttt
cgcgacgacagcgtagacggcatgaagactggccacaccgaatctgccggttattgtttg
gtggcttctgctaagcaagatgatatgcgtttaatctcggtggttctgggcactaaatcc
gactcggcccgcacccaggattcgcaaaagcttttatcctacggtttccgttattacaaa
acctacaccttgtacaacgaaggtgaggctattagcgatgcaagagtttggaagggctta
accgacaaagttagcttaacggtaaatagcgatatcgaagtgaccattcctcgcggcgca
cataaatcggttaaagctgttacccgtgtagattctattattgaagcgcctgtggccccc
ggccaaattttaggtagcctactgcttaaactcgaagacgaagtgctagcagaatacgac
ctagtggctgccaccaaagtggatgaagccggcttttttgctcgcacctgggacagcatc
atgttgatgtttgaagatgatgaagaggcagcaagtgagtaa
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