Saccharophagus degradans: Sde_3448
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Entry
Sde_3448 CDS
T00335
Symbol
pel1D
Name
(GenBank) putative pectin/pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sde
Saccharophagus degradans
Pathway
sde00040
Pentose and glucuronate interconversions
sde01100
Metabolic pathways
sde02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Sde_3448 (pel1D)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sde_3448 (pel1D)
Enzymes [BR:
sde01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Sde_3448 (pel1D)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Trypan_PARP
NESP55
DUF5678
Motif
Other DBs
NCBI-ProteinID:
ABD82703
UniProt:
Q21F26
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All DBs
Position
4390043..4391827
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AA seq
594 aa
AA seq
DB search
MKIFKLLLMFVLAHNLVACGGSNDGGEIELNFGEENTPEPETEPEAEPEGEPEGEPEGEP
EGEPEGEPEGETADATADAGFAGHNFNLTGGEGGTAYTVNNGKDLQTVLDNAKSSNSPVI
IYVDGTINSFNSANGNQPIQIKDMDNVSIIGYGAEATFDGVGIAIRRANNIIIRNLTFKS
VLTEGKDAISIEGDDDGSTTSNIWVDHNEFYSAPTADKDFYDGLIDSKSGASNITISYNY
LHDHWKASLHGHTENDEGAHNTDRKITFHHNRFENIESRLPLFRRGVGHLYNNYYKDVGS
TAINSRIGAELLIENNVFEDSQNPIVSFYSDVIGYWNTSGNLFTNVTWTTPGTGEVSAGA
TQTPTSDYVVPYSYTLMPAADVKAHVIASAGVGKIDQTGLTIPDPVTPEGDLGEPEAPVQ
GDVSLPYTENFAATDAANFFSAAYRDITGSAGTSTPMYHRVTGTVEINAQQLDMTGARVS
IGNTTPSVSTTGADTTTTGVLDLSAPYTVSFKVVSVGGTLTKKFQIYVDNNTSASGDSIH
GGSSRFYSETLDSLVAGQTYTVTGFTATNSSFITLRTESSGQIVLDDLSIQAAE
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatttttaaattgttattaatgtttgtactcgcccacaacttagttgcttgtggt
ggcagtaacgacggtggtgaaattgaattaaactttggcgaagaaaacacaccagagcca
gaaaccgaaccagaagctgagcctgaaggagaaccagagggcgagccggagggagaacct
gaaggagagcctgaaggggaaccagagggcgaaacagccgacgcaaccgcagatgctggc
ttcgccggccacaattttaatcttaccggtggcgaaggcggcacagcctataccgttaat
aacggcaaagatttgcaaacagttttagacaacgccaaatcgagtaattcaccggtcatt
atttacgtagacggcaccataaattcgtttaactctgccaacggcaaccagcctattcaa
attaaagatatggataacgtatctataattggttacggcgccgaagcaacatttgacggt
gttggtatagcaatacgccgcgccaacaacattattattcgcaaccttacttttaaaagc
gtccttaccgaaggtaaagatgcaattagtatagaaggtgatgacgacggcagcaccacg
tcaaacatttgggttgatcacaacgaattctacagcgccccaacggcagacaaagatttt
tacgacggtttaatcgatagtaaaagcggcgcgagcaacattactatttcttacaactac
ctgcacgaccattggaaagcatcgttacacggccataccgaaaatgacgaaggtgcacac
aacaccgaccgcaaaattactttccaccacaaccgttttgagaatattgaatcgcgttta
ccgctgttccgtcgcggtgtaggccatttgtacaataactactacaaagacgtaggctca
acggctatcaactcacgtattggtgccgagttattaattgagaataacgtttttgaagat
tcacaaaacccgattgtctctttttactctgacgtaattgggtactggaacacctcaggc
aacctcttcaccaatgtaacttggacaaccccaggtactggcgaagtatctgcaggcgca
acacaaacgccaacctcagattacgtagtgccatacagctacacgcttatgccggcagcc
gatgtaaaagcccacgtcattgcgagtgcaggcgttggcaaaatagaccagacagggctt
accattccagaccccgttacccctgaaggcgacctaggtgaaccagaagccccagtgcaa
ggtgatgtaagcctaccttacactgaaaattttgccgccactgacgccgccaatttcttt
agcgccgcgtaccgcgatattactggctctgctggcaccagcacacccatgtaccaccgc
gtaaccggcacggtggaaattaacgcacagcaattggatatgactggcgcacgcgtatca
attggcaacacaacgccaagtgtaagcacaaccggtgcagacaccactacaacgggcgta
ttagatttaagcgcgccctacaccgtaagctttaaagtggtaagcgtaggcggcacccta
actaagaaatttcaaatatatgtagacaacaatacctctgccagcggcgactctattcac
ggcggctcatcgcgcttttacagtgaaactttagactcgctagttgcaggccaaacctac
acagtaaccggctttaccgccaccaacagctctttcataacattacgtaccgaaagtagc
ggccaaattgtattagatgacctaagtattcaagccgcagaataa
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