Saccharophagus degradans: Sde_3656
Help
Entry
Sde_3656 CDS
T00335
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sde
Saccharophagus degradans
Pathway
sde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sde_3656 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sde03021
]
Sde_3656 (rho)
03019 Messenger RNA biogenesis [BR:
sde03019
]
Sde_3656 (rho)
Transcription machinery [BR:
sde03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Sde_3656 (rho)
Messenger RNA biogenesis [BR:
sde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sde_3656 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
Fungal_virus_P2_C
AAA_22
S1CSD-TOTE-2
AAA_25
ResIII
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
ABD82911
UniProt:
Q21EG8
LinkDB
All DBs
Position
4636973..4638232
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTDLKSKPIEELIDLAKEMGMESLARSRKQDVIFNILKRHARSGEDIYGDGVLEILQD
GFGFLRSAGASYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEIN
FDKPENSRNKILFENLTPLFPQERLELETGNGSTEDLTGRIIDLVSPIGKGQRGLIVAPP
KAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPPSRHV
QVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF
FGAARNIEEGGSLSIVATALIDTGSKMDEVIYEEFKGTGNMELHLDRKIAERRVYPAINI
RRSGTRREDLLMKEEELSRVWILRKLLHDMEDVAATEFLSDKLKDFKTNNEFFLSMRSK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgacttaaaatcaaaacccattgaagaacttatcgatcttgcaaaagaa
atgggcatggagagcctagcgcgctcccgcaaacaagacgtcatcttcaacattcttaaa
cgccacgcccgcagcggtgaagatatctacggcgacggtgtattagaaatactgcaagat
ggcttcggctttttgcgctctgcaggcgcttcttacctagctggcccagacgatatttac
gtttcccccagccaaattcgccgctttaacttgcgcaccggcgataccatagcggggaaa
attcgcccccctaaagaaggcgaacgttattttgcccttcttaaagtaaacgaaattaat
ttcgacaagccagaaaactcccgcaacaaaattctcttcgaaaaccttactccgctattc
cctcaggaacgcctcgagttagaaaccggtaacggctctaccgaagacttaaccggccgc
atcatcgacctagtaagccccattggtaaaggtcagcgcggtttgattgttgcaccacct
aaagctggtaaaaccatcatgatgcagaatattgcgcaggctattacgcgcaataaccct
gagtgccatttaattgttttacttatcgacgaacgcccagaagaagtaaccgaaatgcag
cgctctgtgcgcggcgaggtggttgcctctaccttcgacgaaccaccttcgcgccacgta
caagtagccgaaatggttattgaacgtgctaagcgtttagttgagcataaaaaagatgta
attattctgctcgactccatcactcgtttggcgcgcgcttacaacaccgttattccttca
tcaggtaaagtacttaccggtggtgttgatgcccacgcactagagcgcccaaagcgtttc
ttcggtgctgcgcgtaacattgaagaaggcggcagcttatctattgtggctaccgcactt
atcgataccggctctaaaatggatgaagttatctacgaagagtttaaaggtaccggtaac
atggaactgcacctcgaccgcaaaattgccgagcgtcgcgtttaccctgccattaacatc
cgtcgctccggcacccgtcgcgaagacctgttaatgaaagaagaggaactatctcgcgta
tggattctgcgcaaactcctccacgatatggaagacgtagccgccacagaattcctttcc
gacaagctaaaagacttcaaaactaacaacgagtttttcttgtctatgcgctcgaagtaa
DBGET
integrated database retrieval system
