Saccharophagus degradans: Sde_3764
Help
Entry
Sde_3764 CDS
T00335
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sde
Saccharophagus degradans
Pathway
sde03420
Nucleotide excision repair
sde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sde_3764
03430 Mismatch repair
Sde_3764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_3764
Enzymes [BR:
sde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sde_3764
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sde_3764
MMR (mismatch excision repair)
Other MMR factors
Sde_3764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
VMAP-M0
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABD83019
UniProt:
Q21E60
LinkDB
All DBs
Position
complement(4763134..4765308)
Genome browser
AA seq
724 aa
AA seq
DB search
MDVSYLLDGLNEPQREAVSAPLGNILVLAGAGSGKTRVLVHRIAWHIQVEGLSPHQIMAV
TFTNKAAREMRSRLDEIMGERLGPSGVRSMWVGTFHGIAHRLLKAHWQEAGLPQNFQILD
SDDQLRVVKRVYQELQIDDSRFPFKQAQWFINGQKDEGIRPQYIQEGHDPFLATMKQVYA
AYEEACARAGVVDFAELLLRSHELWLKNPTLLKHYQNRFRALLVDEFQDTNSVQYAWLRV
LAGPEGCITAVGDDDQSIYGWRGAKIENIQQFEVDFKNVNTIRLEQNYRSTGTILEAANA
VITNNSQRLGKKLWTSGADGELIDLYSAFNEQDEARYIVERISEWVKDGGAREDVAVLYR
SNAQSRVLEEAFIREGMAYRIYGGQRFYERLEIKNALAYGRLILNRQDDAAFERVINTPT
RGIGSKTVDTLRLMAREQGFSMYEAMLGAIRNGVFTARATNALKAFDELLKLLEASIAAA
RLPDQMDIIINESGLKDFHAKEKGERGQARLENLNELVVACGAFNAEDDEISPLAEFLDR
AALDAGDQQADEYEDAVQMMTLHSAKGLEFPLVFLVGMEENLFPHKMSMEDAGGLEEERR
LAYVGITRAMKKLVLTYAESRRMYGNENFNAISRFVREIPKQLVEEVRINTTVTRPSSYS
TSPLLTGTTSTEGFSLGQSVYHPIFGDGVILQFEGQGPSARVQVNFSTEGTKWLVLQYAK
LEAI
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttacttacttgacggtttaaatgagccccagcgcgaagcggtatccgcc
ccgctgggtaatattcttgtgcttgcgggggctggcagcggtaaaacgcgagtgctggtg
caccgtatcgcctggcatattcaggtggaaggcctttcgccccaccagattatggcggta
acctttaccaataaggccgcgcgcgaaatgcgttcgcgcctagatgagattatgggtgag
cgcttaggccctagtggcgtgcgcagtatgtgggtaggtaccttccacggtattgctcac
cgcttattaaaggcccactggcaagaagccggtttgccacaaaacttccaaatattggat
agcgacgatcaactgcgcgtagttaagcgcgtttatcaagagctgcaaattgacgacagt
cgcttcccgttcaagcaagcccagtggtttattaacggtcaaaaagacgaaggtattcgg
ccgcaatatattcaagaggggcacgacccgttccttgccaccatgaagcaggtatacgcc
gcctacgaagaagcctgcgcgcgtgctggtgtggtggatttcgccgagctgctattgcga
tcccacgagttgtggttaaaaaatcccacgttgcttaaacactaccaaaaccgttttcgc
gccttgctggtggacgaatttcaagataccaactcggtacagtatgcctggttgcgggtg
ctggcagggccagagggctgtattacggcggtaggtgacgacgaccaatctatttacggt
tggcgcggtgccaaaatagaaaatattcagcagtttgaagtagattttaaaaacgtaaac
accattcgcttagagcaaaactaccgttctacgggcaccatattggaagccgccaacgcg
gttattaccaataactcgcagcgactgggtaaaaaactgtggacatcgggcgccgatggc
gagcttatcgatttatattctgcatttaatgagcaagatgaagcgcgttatatcgtcgag
cgcatttctgaatgggtgaaagatggcggcgctcgcgaagacgttgctgtgctgtatcgc
tcgaatgctcaatcgcgggtgctagaagaagcgtttattcgcgaaggcatggcgtaccgc
atatacggtggtcagcgattctacgagcgcctagaaattaaaaatgccctggcctatggt
cgactcattttaaaccgccaagacgatgccgcctttgagcgggttattaacacgccaacg
cgcggtataggcagcaaaacggtggatactcttcgcctaatggcgcgcgagcaaggcttt
agcatgtacgaagccatgttgggcgctattcgcaatggtgtatttaccgctcgcgcaaca
aatgcattaaaagcgttcgacgaattgttaaagctgttagaagccagtattgctgcggcg
cgcttgccagatcaaatggatattattattaatgaatctggcttaaaagattttcacgca
aaagaaaaaggtgagcgcggtcaggcgcgactagaaaacttgaacgaattagttgtggcc
tgcggcgcatttaatgccgaagacgacgagatatctccgctggcagaatttttagatcgc
gctgcgctagatgccggcgatcaacaagccgatgagtacgaagatgcggtgcaaatgatg
actctgcacagcgcaaagggtttggaattcccgctggtcttcttggtgggcatggaagaa
aacctcttcccccataaaatgagtatggaagatgccggtggcttagaagaggagcgtcga
ctggcttatgtaggcattacccgcgctatgaaaaagctggtgcttacctatgcagaaagc
cgccgcatgtatggcaacgaaaattttaatgctatatcgcgttttgtaagggaaattcct
aagcagcttgttgaagaagtgcgtattaacactaccgttacacgccccagtagttactcc
acatccccattgttaaccggcacaacctctacagaaggttttagcctaggccaaagtgtg
taccacccaatatttggcgacggagtaatcttgcagtttgagggtcagggtcccagcgcg
cgagtgcaggtaaactttagtaccgaaggcaccaaatggttggtgctacagtatgcgaag
ctggaagctatttaa
DBGET
integrated database retrieval system
