Streptomyces deccanensis: L3078_05670
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Entry
L3078_05670 CDS
T08215
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdec
Streptomyces deccanensis
Pathway
sdec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L3078_05670 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdec03400
]
L3078_05670 (ligD)
Enzymes [BR:
sdec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L3078_05670 (ligD)
DNA repair and recombination proteins [BR:
sdec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L3078_05670 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ULR48798
LinkDB
All DBs
Position
1241903..1242874
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AA seq
323 aa
AA seq
DB search
MDPLPVLAPMLASTGNLPLPGGDEQWAVETKQDGQRALAFLPGDGTVTIRSRGGHAVTAA
YPELHGLPAALGGRSAVLDGEIIATDADGRPDFELLQSRMGLARKPDRAARLALRVPVHL
VVFDVLYLDGRDLTSRPWTERRRALTGLGLHGPAWSVPAAVVDHAAGALRATREAGLEGV
IAKRLTSPYRPGVRSPDWIKIKNVRTTDAVIGGWVPGTGRLAGLPGAVLLGELRDGPLRY
IGSVGTGWSDRERRRLADLLAVAAWTTCPFTPAPKVAGARWVLPRLVAEITYTTRTRAGY
LRHPSWHRLRPDLTPGDSPEANR
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggacccgcttcccgtcctcgcacccatgctcgcctccaccgggaatctgccgctgccc
ggcggcgacgaacagtgggcggtggagaccaagcaggacggccagcgcgccctggccttc
ctgcccggcgacggcacggtgacgatccgctcccggggcgggcacgcggtcaccgccgcc
tatcccgagctgcacggcctgcccgccgcgctcggcggccggtcggcggtgctggacggg
gagatcatcgccacggacgcggacggccgccccgacttcgaactccttcagtcccgcatg
ggcctggcgcgcaagcccgaccgcgccgcccgcctggcgctgcgggtccccgtgcacctg
gtggtgttcgacgtgctctacctcgacggccgggacctcaccagccggccctggaccgaa
cgccgccgggccctgaccggcctcggcctgcacggaccggcctggtcggtgcccgcggcc
gtcgtcgaccacgccgcaggcgcactccgggcgacccgggaagccgggctggagggcgtg
atcgcgaaacggctcacgtcgccctaccggccgggcgtacgttcccccgactggatcaag
atcaaaaacgtgcggaccaccgatgccgtcatcggcggctgggtacccggcaccggccgg
ctggccggactgcccggcgccgtcctcctcggcgagctccgcgacggcccgctgcgctac
atcggttcggtcggcaccggctggagcgaccgcgaacgccgccggctcgccgacctgctc
gcggtggccgcctggaccacctgccccttcacccccgcccccaaggtggccggagcccgc
tgggtcctgccccgtctcgtcgccgagatcacctacaccacccgcacccgcgccggatac
ctgcgccacccctcctggcaccggctccgtcccgacctcacccccggcgactcgcctgag
gccaaccgctga
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