Streptomyces deccanensis: L3078_16400
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Entry
L3078_16400 CDS
T08215
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sdec
Streptomyces deccanensis
Pathway
sdec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
L3078_16400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdec03400
]
L3078_16400
Enzymes [BR:
sdec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
L3078_16400
DNA repair and recombination proteins [BR:
sdec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L3078_16400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
AAA_22
HHH_5
Helicase_RecD
PIF1
NPHP3_N
AAA_16
TraI_hel_assoc_N
PhoH
nSTAND3
DEAD
AAA
UvrD_C
HTH_IclR
TrwB_AAD_bind
ABC_tran
SLFN-g3_helicase
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ULR50753
LinkDB
All DBs
Position
complement(3682653..3684911)
Genome browser
AA seq
752 aa
AA seq
DB search
MAQQAGNPPGERRLAVLEGVLERITYANEDNGYTVARVDTGRGGGDLLTVVGALLGAQVG
ESLRMEGRWGSHPQYGKQFTVENYTTVLPATVQGIRRYLGSGLVKGIGPIFADRITQHFG
LDTLQIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQTVEVSTSIAVRIYK
KYGDASIGVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQATDQ
GNCYLPEERLIADAVKLLQVDTGLVIECLAELALPDEDSGEPGVVREKVPGQDGGDPVTA
IYLVPFHRAELSLSAQLLRLLRTDADRMPGFHDVAWDKALTWLKGRTGAELAPEQEAAVR
LALTEKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGAEASTV
HRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQL
PSVGAGEVLRDLLADGSPVPAVRLTKVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLF
VEDDTEEAGRLTVDVAARRIPARFGLDPRRDVQVLAPMHRGPAGAGNLNGLLQQAITPAR
PDLPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTALDPVDQRLTVLTDEDEE
VGYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVL
VGSRKAIGQAVRTVSAGRRCTALDFRLAPRVL
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggctcaacaggcgggaaatcccccgggcgaacgacgtctcgccgtactcgaaggcgtc
ctggaacgcatcacgtacgccaacgaggacaacggctacacggtcgcgcgcgtggacacc
ggccggggcggcggcgatctcctgaccgtcgtcggcgcgctgctcggcgcacaggtcggc
gaatccctgcgcatggagggccgttggggctcccacccccaatacggcaaacaattcacc
gtcgagaactacacgaccgtcctcccggccaccgtccagggcatccgccgctacctcggc
tccggtctggtcaagggcatcggcccgatcttcgccgaccgcatcacccagcacttcggc
ctggacaccctgcagatcatcgaggaggagccgaagcgcctcatcgaggtccccggtctc
ggccccaagcgcaccaagaagatcgccgacgcctgggaggaacagaaggcgatcaaggaa
gtcatgctcttcctccagaccgtcgaggtgtccacgtccatcgcggtccgtatctacaag
aagtacggcgacgcctcgatcggggtcgtgaagaaccagccgtaccggctcgccgccgac
gtctggggcatcggcttcctcaccgccgacaagatcgcccagtccgtcggcatcccccac
gacagcccggagcgcgtcaaggcgggcctgcagtacgccctgtcgcaggcaaccgaccag
ggcaactgctacctcccggaggagcgtctgatcgccgacgcggtcaagctcctccaggtc
gacacgggcctggtcatcgagtgcctggccgaactcgccctgccggacgaggactcgggc
gagcccggcgtcgtacgcgagaaggtacccgggcaggacggtggcgacccggtcaccgcc
atctacctcgtccccttccaccgcgccgaactctccctctccgcccagctgttgcgcctc
ctgcgcaccgacgccgaccgcatgcccggcttccacgacgtcgcctgggacaaggcactg
acgtggctgaaggggcgtacgggcgcggagttggcccccgagcaggaggccgccgtacgc
ctcgcgctgaccgagaaggtggccgtgctgaccggcggcccgggatgcggcaagtccttc
acggtccgctcgatcgtggagctggcccgcgccaagaaggcgaaggtcgtgctggccgcg
cccaccggccgggccgccaagcgcctcgccgagctgaccggcgccgaggcctccaccgtc
caccgcctgctggagctgaagcccggcggcgacgcggcctacgacaaggaccgcccgctg
gacgccgacctggtggtcgtcgacgaggcctccatgctggacctcctcctcgccaacaag
ctggtgaaggcggtgcccccgggcgcccacctgctcttcgtcggcgacgtcgaccagctc
cccagcgtcggcgcgggcgaggtcctgcgcgacctgctggcggacggcagccccgtcccc
gccgtccgcctcaccaaggtcttccgccaggcccagcagtccggtgtggtgaccaacgcg
caccggatcaactccgggcagcatccggtcaccgacggcatgaaggacttcttcctcttc
gtcgaggacgacacggaggaggcggggcggctcaccgtggacgtcgcggcccgtcgcatt
cccgccaggttcgggctcgacccgcgccgggacgtccaggtgctggcgccgatgcaccgg
ggcccggcgggcgcgggcaacctcaacggactgctccagcaggccatcacccccgcccgc
cccgacctgcccgagaagcggttcggcggccgggtcttccgcgtcggcgacaaggtcacc
cagattcgcaacaattacgagaagggcgagaacggagtcttcaacggcaccgtcggcgtg
gtcaccgcgctcgacccggtcgaccagcggctgacggtcctcaccgacgaggacgaggag
gtgggctacgagttcgacgaactggacgagctggcgcacgcctacgcggtgacgatccac
cggtcccagggcagcgagtacccggccgtggtgatcccggtcaccaccggagcgtggatg
atgctccagcgcaacctcctctacacggcggtgaccagggcgaagaagctggtcgtcctc
gtcggctcccgcaaggcgatagggcaggcggtccggacggtctcggcgggccggcggtgc
acggctctcgacttccgcctcgcaccacgggttttgtag
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