Streptomyces deccanensis: L3078_18640
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Entry
L3078_18640 CDS
T08215
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
sdec
Streptomyces deccanensis
Brite
KEGG Orthology (KO) [BR:
sdec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdec03021
]
L3078_18640
Transcription machinery [BR:
sdec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L3078_18640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
HTH_23
HTH_Crp_2
HTH_24
MarR_2
HTH_3
GerE
DUF7343
KORA
MarR
Apolipoprotein
IF2_N
Motif
Other DBs
NCBI-ProteinID:
ULR51153
LinkDB
All DBs
Position
4195266..4196168
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AA seq
300 aa
AA seq
DB search
MSPRLDESHTQRATSASAPEETQDDLAHNPGDALADLPEIPPYDEVGPVDARALSKTLFE
RLESLEEGTYEYSYVRNTLVELNLALVKFAASRFRSRSEPMEDIIQVGTIGLIKAIDRFE
LSRGVEFPTFAMPTIVGEIKRFFRDTSWSVRVPRRLQELRLDLAKAGDELAQKLDRAPTV
GELAERLGLTNDEVVEGMAASNAYTASSLDAQPEEDDSEGALADRIGYEDHGLEGIEYVE
SLKPLIAELPPRDRKILSLRFVAGMTQSEIGDELGISQMHVSRLLSRTLVRLRKGLTLEE
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccccggctcgacgaatcgcatacccagagggcgacgtcggcatccgccccggaa
gagacgcaggacgacctcgcccacaatccgggcgacgcgctcgccgacctcccggagatc
cccccgtacgacgaggtgggaccggtggacgcacgagccctgtccaagaccctcttcgag
cggctcgaatcccttgaggaaggcacgtacgaatactcgtacgtccgcaacaccctggtc
gaactcaacctggctctggtgaagttcgccgcctcccggttccgctcgcgcagcgaaccc
atggaggacatcatccaggtcggcacgatcggcctcatcaaggcgatcgaccgcttcgaa
ctgagcaggggcgtcgagttccccacgttcgcgatgccgacgatcgtcggtgagatcaag
cgtttcttccgcgacacgagttggtccgtgcgggtgccgcgcagacttcaggagctccgg
ctcgacctggccaaggccggcgacgagctcgctcagaagctcgatcgcgctccgacggtg
ggagagctggcggagcgcctcgggctgacgaacgacgaggtcgtcgaaggcatggcggcg
tcgaacgcgtacaccgcctcgtcgctggacgcccagcccgaggaggacgactccgagggc
gccctggcggaccggatcggctacgaggaccacggcctcgaaggcatcgagtacgtcgag
tccctgaagccgctgatcgccgaactgccgccgcgcgaccggaagatcctgtcgctgcgg
ttcgtggccggcatgacgcagtccgagatcggggacgaactgggcatctcccagatgcac
gtctcccggttgctgtcccgcacgctggtacgcctgcgcaaggggctgacgctggaggag
tga
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