Streptomyces deccanensis: L3078_21855
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Entry
L3078_21855 CDS
T08215
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sdec
Streptomyces deccanensis
Brite
KEGG Orthology (KO) [BR:
sdec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdec03019
]
L3078_21855 (hrpA)
Enzymes [BR:
sdec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L3078_21855 (hrpA)
Messenger RNA biogenesis [BR:
sdec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L3078_21855 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_19
DEAD
AAA_22
nSTAND3
T2SSE
NACHT
SLFN-g3_helicase
AAA_16
TsaE
AAA_30
NTPase_1
MetJ
PhoH
Motif
Other DBs
NCBI-ProteinID:
ULR51731
LinkDB
All DBs
Position
4898941..4902918
Genome browser
AA seq
1325 aa
AA seq
DB search
MSTPPAPAFGALAPRLAELSLRDAHRLGRRLEGARKIRKPEARAAVLAEIEAEVAKGESR
MAERAARVPAVSYPEQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICMELGRG
VRGMIGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDSDDADRDQITAICDAVEELQAEGKGDILVFLS
GEREIRDTADALNKKNYRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGVCIRLYSEDDFE
ARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPA
QKDVRKRLTPMGRKLSQLPVDPRLARMVVEADKNGCAREVMVIAAALSIQDPRERPADKQ
AQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
SQLRTVAKQMDIHLNEDDAPEQHIHVSLLAGLLSHIGMKDVKDAGAESGRGSGKNEYLGA
RNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNARIEPEWVEPLAEHLLKRTYSEP
HWEKDQAAVMAYEKVTLYGVPIVAQRKINYGRIDPEASRELFIRNALVEGDWRTHHKFFA
DNRKLLSEVEELEHRARRRDIVVDDDTLFDFYDQRVPEHVVSGAHFDSWWKHKRHEQPDF
LDFEREMLIRESAEAVTKADYPDSWRQGQLKFRVTYQFEPGADADGVTVHIPLQVLNQVT
DEGFDWQIPGLREEVVTELIRSLPKPIRRNYVPAPNFAQRFLDQAVPLQEPLPVTMAREL
KRMVGVPVTPEDFDWSRVPDHLKITFRIVDERRRKLAEDKDLEALRQQLRPKARKALSQA
AAATAERQGGESVERTGLTDWTIGSLTRVFETRRAGQPVKAYPALVDDGPAANTVSVRLF
DTEAEQMEAMWNGTRRLILRNIPVNPAKFASEKLTNAQKLALSANPHGSIQALFDDCAMA
AADKLIADFGGPAWDESSYRKLYDKVRAEIVDTTVRTVGQVQQVLAAWQACERRLKSTRS
TALLANLADVRGQLDALVKPGFVTEAGLRRLPDLMRYLVAADRRLQQMPTGAQRDTSRME
KVHEMRDEYAWLLEQLPQGRPVPSSVKEIRWMLEELRVSYFAHALGTAYPVSDKRIVKAI
DAAIP
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgccacctgcccccgccttcggcgccctcgccccccgcctggccgagctgtcg
ctgcgcgacgcgcaccggctcgggcgcaggctcgaaggcgcgcgcaagatccgtaagccc
gaggcccgggccgccgtcctcgccgagatcgaggcggaggtcgccaagggcgagtcccgc
atggccgagcgcgccgcccgcgtaccggccgtctcgtaccccgagcagctgcccgtcagc
cagaagaaggacgagatcgcggccgccatccgcgaccaccaggtcgtcatcgtcgcgggc
gagaccggctccggcaagacgacccagatcccgaagatctgtatggagctggggcgtggc
gtacgcggcatgatcggccacacccagccgagacgcatcgccgcccgcaccgtcgccgag
cgtgtggcggaggagctgcggacgccgctcggcgaggcggtcggctggaaggtgcggttc
accgaccaggtcaacccggacgccaccttcgtcaagctgatgacggacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctgggctatctcgcccagctgctgcccaag
cgccccgatctcaaggtcgtcatcacctccgcgaccatcgacccggagcgtttctcccgc
cacttcggcgacgccccgatcgtcgaggtcagcggccgtacgtaccccgtggaggtgcgc
taccgccccctcctcgaagaggactccgacgacgccgaccgcgaccagatcaccgcgatc
tgcgacgccgtcgaggagctgcaggccgagggcaagggcgacatcctcgtcttcctctcc
ggtgagcgcgagatccgggacacggccgacgccctgaacaagaagaactaccgcttcacc
gaggtcctccccctctacgcccggctctcgcacgccgagcagcaccgcgtcttccagccg
cacaccggtcgcaggatcgttctggccacgaacgtcgccgagacctccctgaccgtcccg
ggcatcaagtacgtcatcgacccgggcttcgcccgcatcagccgctacagccaccgcacc
aaggtccagcgcctgccgatcgaggccatctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtcggacggtgtctgcatccggctctacagcgaggacgacttcgag
gcccgccccgagttcacggacgcggagatcctccggaccaacctcgcctccgtcatcctc
cagatgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggcgtccagctcctccaggagctcggcgcgctcgacccggcg
cagaaggacgtccgcaagcgcctcaccccgatgggccgcaagctctcccagctgcccgtc
gacccccggctcgcccgcatggtcgtcgaggccgacaagaacggctgcgcgcgcgaggtc
atggtgatcgccgccgcgctctccatccaggacccgcgcgaacgccccgccgacaagcag
gcccaggcggaccagcagcacgcccgcttcaaggacgagaccagcgacttcctcgcctac
ctcaacctctggcggtacgtccgcgagcagcagaaggagcgcggctcgtcgtcgttccgc
cggatgtgcaagcaggagtacctgaacttcctgcgcatccgtgagtggcaggacatctac
agccagctgcgcacggtcgccaaacagatggacatccatctcaacgaggacgacgccccc
gagcagcacatccatgtctcgctcctggccggcctgctctcccacatcggcatgaaggac
gtgaaggacgccggggccgagagcggcaggggctcggggaagaacgagtacctgggcgcc
cggaacgccaagttcgcgatcttcccgggctcggccctcttcaagaagcccccccgcttc
gtgatgtcggccgagctggtggagaccagccgcctgtgggcccgcgtcaacgcgcggatc
gagcccgaatgggtcgagcccctcgccgagcacctcctcaagcggacgtacagcgagccg
cactgggagaaggaccaggcggccgtgatggcgtacgagaaggtcacgctgtacggcgtg
ccgatcgtcgcccagcggaagatcaactacggccggatcgacccggaggccagccgcgag
ctgttcatccgcaacgcgctcgtcgagggcgactggcgcacgcaccacaagttcttcgcc
gacaaccgcaagctcctcagcgaggtcgaggaactggaacaccgggcccggcgccgggac
atcgtggtcgacgacgacacgctcttcgacttctacgaccagcgggtccccgagcatgtc
gtctcgggcgcccacttcgactcctggtggaagcacaagcgccacgagcagcccgacttc
ctggacttcgagcgggagatgctcatccgggagtcggccgaggcggtcaccaaggccgac
tacccggactcctggcggcagggacagctgaagttccgcgtcacgtaccagttcgagccg
ggcgccgacgcggacggtgtgacggtccacatccccctccaggtcctcaaccaggtcacc
gacgagggcttcgactggcagatcccgggcctgcgggaggaggtggtgacggagctgatc
cgttccctcccgaagccgatccggcggaactacgtgccggcgccgaacttcgcacagcgc
ttcctggaccaggcggtccctctccaggagccgttgccggtgacgatggcccgcgagctc
aagcgcatggtgggtgtgccggtgacgcccgaggacttcgactggtcccgggttcccgac
catctgaagatcaccttccggatcgtcgacgagcggcgcaggaagctcgccgaggacaag
gacctggaagcgctgcggcagcagttgaggccgaaggcccgcaaggccctctcgcaggcc
gccgcggccaccgccgagcgccagggcggcgagtcagtggagcggacgggcctgacggac
tggacgatcggctcgctcacccgggtcttcgagacccgccgggccgggcagccggtgaag
gcgtatccggccctcgtcgacgacggtccggcggcgaacaccgtctccgtacgcctcttc
gacacggaggcggagcagatggaggcgatgtggaacggcacccgtaggctcatcctccga
aacattccggtcaaccctgcgaagttcgcgagcgaaaagctcaccaacgcgcagaagctg
gcactgtcggccaacccgcacggttcgatccaggccctgttcgacgactgcgcgatggcc
gccgccgacaagctgatcgccgacttcggcggaccggcgtgggacgagtcgtcgtaccgg
aagctgtacgacaaggtccgcgcggagatcgtcgacaccacggtccgcacggtcggccag
gtgcagcaggtgctggccgcctggcaggcctgcgaacgccgcctgaagtcgacccgcagc
acggccctcctcgccaacctcgcggacgtacggggccagctggacgccctcgtgaagccc
gggttcgtcacggaggcggggctgcgccggctgccggacctgatgcgctatctggtggcg
gccgaccgccggctgcagcagatgccgaccggcgcccagcgggacacgtcccggatggag
aaggtccacgagatgcgcgacgagtacgcctggctgctggaacaactgccccaggggcgg
cccgtgccctcctccgtcaaggagatccgctggatgctcgaggagttgcgcgtcagctac
ttcgcgcacgccctgggcacggcctaccccgtctccgacaagcggatcgtgaaggcgatc
gacgctgcgattccgtga
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