Streptomyces deccanensis: L3078_22150
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Entry
L3078_22150 CDS
T08215
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
sdec
Streptomyces deccanensis
Brite
KEGG Orthology (KO) [BR:
sdec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdec03021
]
L3078_22150
Transcription machinery [BR:
sdec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L3078_22150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_Crp_2
GerE
MarR_2
NirdL-like_HTH
MarR
HTH_3
DUF7343
DUF134
Motif
Other DBs
NCBI-ProteinID:
ULR51773
LinkDB
All DBs
Position
4961054..4961941
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AA seq
295 aa
AA seq
DB search
MDEEVALTVSASTAPPQEDVPAPDPSSAQVTAQATAPAPEKRRGADTRALTQVLFGELKH
LAPGTPEHNRVRGALIEANLPLVRYAAARFRSRNEPMEDVVQVGTIGLINAIDRFDPDRG
VQFPTFAMPTVVGEIKRYFRDNVRTVHVPRRLHELWVQVNSATEDLTTAFGRTPSTAEIA
ERLRITEEEVLSCIEAGRSYHATSLEAAQEGDGLPGLLDRLGYEDPELDGVEHRDLVRHL
LVQLPEREQRILLLRYYSNLTQSQISAELGVSQMHVSRLLARSFARLRSANRIEA
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaggtggcgttgaccgtgtcggccagtactgcgcctccccaggaagacgtc
ccggctcccgacccctcgtcggcccaggtcaccgcccaggccacggcccccgccccggag
aaacgtcgcggcgccgacacccgggccctcacccaggtgctgttcggcgagctgaagcat
ctggcaccgggcactccggagcacaaccgcgtgcgcggggcgctcatcgaggcgaacctc
ccgctcgtgcgctacgcggccgcccgtttccgctcccgcaacgagcccatggaggacgtc
gtccaggtcggcaccatcggactgatcaacgccatcgaccggttcgacccggaccgcggc
gtgcagttcccgaccttcgccatgccgaccgtcgtcggggagatcaagcggtacttccgt
gacaacgtccgcacggtccacgtcccgcgccggctgcacgagttgtgggtccaggtgaac
agcgcgaccgaggacctcaccaccgccttcggccgcaccccctccaccgccgagatcgcc
gagcggctgcgcatcaccgaggaggaggtcctgtcctgcatcgaggcgggccgctcgtac
cacgcgacctccctggaggccgcccaggagggcgacggactgccggggctgctcgaccgg
ctcggctacgaggaccccgaactcgacggcgtcgaacaccgtgacctcgtacgccacctc
ctcgtccaactccccgaacgcgaacagcggatcctgctgctccgctactacagcaacctc
acgcagtcgcagatcagcgcggagctgggggtctcccagatgcatgtgtcgcggctgctg
gcccggagcttcgcgcggctgcggtcggccaaccggatcgaggcgtag
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