Streptomyces deccanensis: L3078_33510
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Entry
L3078_33510 CDS
T08215
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sdec
Streptomyces deccanensis
Pathway
sdec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3078_33510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdec03019
]
L3078_33510
03400 DNA repair and recombination proteins [BR:
sdec03400
]
L3078_33510
Enzymes [BR:
sdec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3078_33510
Messenger RNA biogenesis [BR:
sdec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3078_33510
DNA repair and recombination proteins [BR:
sdec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L3078_33510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ULR53799
LinkDB
All DBs
Position
complement(7570941..7573121)
Genome browser
AA seq
726 aa
AA seq
DB search
MSDEDLSPMDRRELRTAADTVLARLVGAPAGGARLREDQWHAIEALVADQRRALVVQRTG
WGKSAVYFVATALLRERGAGPTVIVSPLLALMRNQVDAAARAGIHARTINSSNTEEWDTI
RQEVTAGTVDVLLVSPERLNNPDFRDQVLPELAAATGLLVVDEAHCISDWGHDFRPDYRR
LRTMLADLPQGVPVLATTATANARVTADVAEQLGTGGGTDALVLRGPLDRESLSLGVLEL
PDAAHRMAWLADHLDELPGSGIIYTLTVAAAEEVTAFLRQCGHTVTSYTGKTENADRQQA
EEDLLANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLL
LPGREDQAIWEYFASVAFPPEEQVRRTLDVLAHAERPLSLPALEPLVELRRSRLETMLKV
LDVDGAVRRVQGGWVSTGVPWTYDTERYAWVAKQRAAEQQAMRDYVTTSGCRMEFLRRQL
DDEEAAPCGRCDTCTKPRFAESVSSAALDAARGELGRAGVEVEPRKMWPTGLPAVGVNLK
GRIPAGEQAAPGRALGRLSDIGWGNRLRPMLAPQAPDGPVPDDVAKAVVAVLADWAKGPG
GWASGQADAQPRPVGVVTMASRTRPQLIGSLGARIAEIGRLPLLGSVAYTGAVTQVTRSN
SAQRLKALDGALTVPPELAAALREADGPVLLIDDATETGWTLAVATRVLRRAGAQGVLPL
VLAVRG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaagacctgtcccccatggaccgccgagagctacgtacggccgccgacacc
gtgctcgcccgtctcgtcggcgcgccggcgggtggcgcgcgactgcgcgaggaccagtgg
cacgccatcgaggcgctggtcgcggatcagcgcagagccctggtggtgcagcgcacgggc
tggggcaagtccgcggtgtacttcgtcgcgaccgcgctgctgcgcgaacggggtgcgggc
cccaccgtcatcgtctccccgctcctcgccctcatgcgcaaccaggtggatgcggccgcc
cgcgccggcatccacgcgcggacgatcaactcgtcgaacacggaggagtgggacaccatc
cgccaggaggtcactgcgggcacggtcgacgtgctcctggtcagcccggagcggctcaac
aaccccgacttccgtgaccaggtcctgcccgagctggcggccgcgaccgggctgctcgtg
gtcgacgaggcgcactgcatctcggactggggtcatgacttccgccccgactaccggcga
ctgcgcaccatgctggccgatctgccgcagggagtcccggtgctcgccacgaccgcgacg
gccaacgcgcgcgtgacggcagacgtggcggagcagttgggcacgggcggcggcacggac
gccctggtcctgcgcgggccgctggaccgcgagagcctgagcctcggtgtgctcgagctg
ccggacgccgcccaccggatggcctggctcgccgaccacctggacgagttgccgggctcc
gggatcatctacacgctcaccgtggccgccgccgaggaggtcaccgcgttcctccgccag
tgcgggcacaccgtgacgtcgtacacgggcaagacggagaacgccgaccggcagcaggcc
gaggaggatctcctcgccaaccgggtcaaggcccttgtcgccacctccgctctggggatg
ggcttcgacaagcccgacctggggttcgtcgtgcacctgggctcgccgtcctcccccatc
gcctactaccagcaggtgggccgcgcgggtcgcggtgtcgagcacgccgaggtgctgctg
ctgcccggcagggaggaccaggcgatctgggagtacttcgcctcggtcgccttccctccg
gaggagcaggtgcgccggaccctggacgtcctggcacacgccgagcgacccctgtccctg
cccgccctcgaaccgctggtggaactgcgtcgttcccggttggagacgatgctgaaggtc
ctcgacgtggacggcgcggtccgccgcgtccagggcggctgggtctccaccggcgttccc
tggacgtacgacaccgagcgctatgcctgggtcgccaagcagcgcgcggccgagcagcag
gccatgcgtgactacgtcacgacgtcaggctgccggatggagttcctgcgacggcagctg
gacgacgaggaggcggcgccctgcgggcggtgcgacacctgcaccaagcccaggttcgcg
gaatccgtctcgtcggcggcgctggacgcggcgcgcggcgagttggggcgggcgggggtc
gaggtggagccccgcaagatgtggccgaccgggctgcctgcggtcggcgtgaatctgaaa
ggacgcattccggccggtgaacaggcggctccggggcgagcgttggggcggctgtcggac
atcggctggggcaaccgactccggccgatgctcgcgccgcaggccccggacggaccggtt
cctgacgacgtggcgaaggcggtggtggccgtactggccgactgggcgaagggccccggc
ggctgggcctccggacaggccgacgcacagccccgaccggtgggggtcgtcaccatggcg
tcccgtacccggccgcagctgatcggttccctgggcgcgcggatcgccgagatcggccgt
ctgccgctgctgggttcggtggcgtacaccggcgcggtcacgcaggtcacccgcagcaac
agcgcacaacggctcaaggcgctcgacggggcgctgaccgtgccgcccgaactggccgcc
gccctcagggaggcggacgggcccgttctgctgatcgacgacgccacggagaccggctgg
accctcgcggtcgccacgcgcgtgctccggcgcgcgggcgcacagggggtgttgccgctc
gtgctcgccgtccgggggtga
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