Streptomyces deccanensis: L3078_35985
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Entry
L3078_35985 CDS
T08215
Name
(GenBank) rhamnogalacturonase B precursor
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sdec
Streptomyces deccanensis
Brite
KEGG Orthology (KO) [BR:
sdec00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
L3078_35985
Enzymes [BR:
sdec01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
L3078_35985
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Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
DUF4397
EMC7_beta-sandw
Motif
Other DBs
NCBI-ProteinID:
ULR54255
LinkDB
All DBs
Position
complement(8134947..8136629)
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AA seq
560 aa
AA seq
DB search
MSGSPDRTTLGRRGFVVGTAATAVGAALAVPLAGTARAATFGYTDDGTNYVIDTGANLVF
KVRKSNGDLSSLVYRGVEYQGYGGMNSHIESGLGTSTVTIRQSGSTILVSVAYGTLRHYY
AARSGENNVYLWTNKADTSVSATRFILRVKAGLFLNDEPDSYTYAPSTIEASDVFRKSDG
QTRSKHFSRLRVMDYDYVGWSANGVGLWMVRSNHEKASGGPFYRSLLRHQSADGGGLYEI
LYYGQNQTEEQRFGLQGPYVIAFTDGGAPSSSLFPGTLTTSWADSLGLSGYVSASGRGRV
AGVGITGRNTAYAYTVGIANSTAQYWGSARASDGWFSISGVLPGTYTLTVFKGELAVYTT
SVTVTAGGTTTLNSIAIPSTNDPSNASAIWRINDWNGTPSGFKNADLMTYAHPSDTRAAA
WTGNVVIGSGSETSAFPCYLWKDVNSGLLVYFRLTAAQAAAAHTLRIGVTTAYANGRPQV
VVNDTWTSAIPSPPTQPNTRSLTNGSYRGNNHTFTYSVPASAWLTDTSQYNVLKINVVSG
SGTTSYLSAGTAIDAIDLLS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtccggatcccccgaccgcacgacgctcggccgacgcggcttcgtcgtcggtaccgcc
gccaccgccgtcggcgccgcactcgccgttccgctggccggcaccgcccgcgcggccacg
ttcggctacaccgacgacggcaccaactacgtgatcgacaccggcgcgaacctcgtgttc
aaggtcaggaagagcaacggcgacctgtcgtcgctggtctaccggggcgtggagtaccag
ggctacggcggcatgaactcgcacatcgagtccggcctcggcacctccaccgtcaccatc
cgccagtccggctcgacgatcctcgtctccgtcgcctacggcacgctgaggcactactac
gcggcccgcagcggcgagaacaacgtctacctgtggaccaacaaggccgacacctcggtc
tccgcgacccgcttcatcctgcgggtgaaggcgggcctgttcctcaacgacgagcccgac
tcctacacctacgcgcccagcaccatcgaggcatcggacgtgttcaggaagtccgacggc
cagacccgctcgaagcacttctccagactccgcgtcatggactacgactacgtcggctgg
tcggcgaacggggtcggcctgtggatggtgcgcagcaaccacgagaaggcctccggcggc
cccttctaccgctccctcctgcgccaccagagcgcggacggcggcggcctctacgagatc
ctgtactacgggcagaaccagaccgaggaacagcggttcggcctccagggcccgtacgtc
atcgcgttcacggacggcggggcgccctcctcctcgctgttcccggggaccctgaccacc
tcgtgggcggactcgctcggcctgtccgggtacgtctccgcgagcggccggggccgggtg
gcgggcgtcggcatcaccgggcggaacacggcgtacgcgtacaccgtggggatcgccaac
tcgacggcgcagtactggggttcggctcgggcgtcggacggctggttctccatctccggg
gtgctgccggggacgtacaccctcacggtgttcaagggtgagctggcggtgtacaccacc
tcggtgacggtcacggcgggcgggacgacgaccctgaactcgatcgcgatcccgtccacc
aacgacccgtcgaacgcgtccgcgatctggcggatcaacgactggaacggcacgccgagc
gggttcaagaacgccgacctgatgacgtacgcgcatccgtcggacacgcgggccgccgcc
tggaccggcaacgtggtgatcggcagcgggagcgagacctcggccttcccctgctacctc
tggaaggacgtgaacagcggtctcctcgtctacttccggctgaccgccgcgcaggccgcc
gccgcccacaccctgcgcatcggggtgacgacggcctacgccaacggccggccgcaggtc
gtcgtgaacgacacctggacctcggccatcccctcgccgcccacccagccgaacacgcgg
tccctgaccaacgggtcctaccggggcaacaaccacacgttcacctacagcgtcccggcg
tccgcctggctgacggacacgagtcagtacaacgtgctgaagatcaacgtggtgagcggt
tcggggacgacctcctacctcagtgcggggacggcgatcgacgcgatcgacctgctgagc
tga
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