Stutzerimonas degradans: GOM96_01300
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Entry
GOM96_01300 CDS
T08431
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GOM96_01300
09124 Replication and repair
03420 Nucleotide excision repair
GOM96_01300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdeg03021
]
GOM96_01300
03036 Chromosome and associated proteins [BR:
sdeg03036
]
GOM96_01300
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_01300
Enzymes [BR:
sdeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
GOM96_01300
Transcription machinery [BR:
sdeg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GOM96_01300
Chromosome and associated proteins [BR:
sdeg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
GOM96_01300
DNA repair and recombination proteins [BR:
sdeg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GOM96_01300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QGW19681
LinkDB
All DBs
Position
283178..285439
Genome browser
AA seq
753 aa
AA seq
DB search
MNYRIAVRALCEFTAKQGDLDLRFTPSPTALEGIAGHAQVTARRGAGYEREVALEGAYGA
LTVRGRADGYDPQRNRLEEIKTFRGDLSRQPANHRLLHWAQAKVYGWLLCQTRGLAEIEL
ALVYFDVLSQKETLLIERHRADELRQFFEAQCMRFLAWAEQEMAHRAQRDLALHALKFPY
GEFRQGQRQLAEAAYKAACTGTVLMAQAPTGIGKTLGTLFPLLKAMPGQQLDKLFFLAAK
TSGRRLALDALQTLQRTGADEVRVLELIARDKACEHPDKACHGESCPLARGFYDRLPVAR
QAALAHPQLDQTTLREVALAHDVCPYYLSQEMARWADVVIGDYNYYFDVSALLHGLTLTN
QWRACVLVDEAHNLLERARSMYSAELDQRDFKGLRAKAPAKLHKSLSRIQRCWNELHRDQ
TGEYRVLAELPQKLIGALQQLVSAVTDYLGENPTGVEAAILNAYFQAMHLCRMAELFGEH
SLVDCTLLPAGGSARGKASRLCLRNVIPAPFLAPRLAQARACVLFSATLSPRRFYADTLG
VPTSSVWIDVDSPFRGEQLQVQLARHISTRYQDRERSLAPIVALLVEQYRRRPGNYLAFF
SSFDYLQQVAALLAECHPDVPVWQQTRGMQESAREAFLARFEANGRGIGFAVLGGAFAEG
IDLPGNRLIGAFVATLGLPQVNPVNEQLKARMEAVFGNGYDYTYLYPGLQKVVQAAGRVI
RTTQDEGVIHLIDDRFARTQVRRLLPSWWEIGR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
gtgaactatcggattgccgtgcgggcactctgcgagttcaccgccaagcagggcgatctg
gacttacgcttcacgccctcgcccaccgcgctggaaggcatcgccggtcacgctcaggtc
accgcccgccggggcgcgggctacgagcgcgaagtcgccctggaaggcgcctacggtgcg
cttaccgtgcgcggtcgggccgatggctacgatccgcagcgcaaccgtctggaggagatc
aagacgttccgcggcgacctctcccgccagccggccaaccatcgcctgctgcattgggcg
caagccaaggtctacggctggctgctctgccaaacgcggggactggcggaaatcgagctg
gcgctggtgtatttcgacgtgctcagtcagaaggaaacgctgctgatcgaacgccatcgc
gctgacgaactgcgccagttcttcgaggcccagtgcatgcgtttcctcgcctgggccgag
caggagatggcccaccgcgcgcagcgcgatctggcgctgcacgcgctgaaattcccctat
ggtgaattccgccagggccagcgtcagctagccgaagcggcctacaaggccgcctgcacc
ggcaccgtgctgatggcgcaggctccgactggcatcggcaagacgctgggcacgctgttc
ccgctgcttaaggcgatgccgggccagcagctggacaagctgttctttctcgccgccaag
acctcagggcgacgcctggcgctggacgcactgcagacgttgcagcgcactggcgcggac
gaggtgcgcgtgctggagctcatcgcccgcgacaaggcctgcgagcatccggacaaggcc
tgccacggcgagtcctgtccgctggcgcgcggcttctatgaccggctgccggtggcgcga
caagccgcgctggcgcacccgcagctggatcagacgacgctgcgcgaggtggcgctggcg
cacgatgtctgtccttactacctcagccaggaaatggcgcgctgggctgacgtggtgatc
ggcgattacaactactacttcgacgtcagcgcgctgctccacgggctgacgctgaccaat
cagtggcgtgcctgcgtgctggtggatgaagcgcacaacctcctcgagcgcgctcggagc
atgtacagcgccgagttggatcaacgagatttcaaaggcttgcgagccaaagctcctgca
aaactgcacaaatcgctcagccgtattcagcgctgttggaacgagctgcaccgcgaccag
accggcgagtatcgcgtgctggcggaactgccgcaaaagctgatcggcgcgctgcagcaa
ctggttagcgccgttaccgattacctgggcgagaaccccaccggcgtggaagccgccata
ctcaacgcctacttccaggccatgcatctgtgccggatggctgaactgttcggcgagcac
tcgctggtcgattgcacattactgcccgcgggcggttcggctcgtggcaaggcttcgcgg
ttgtgcctgcgcaatgtgatcccggcgccgttcctcgcgccgcggctggcgcaggcgcgc
gcctgcgtgctgttttccgccacgctcagcccgcgtcggttctacgccgacaccctgggg
gtgccgaccagcagtgtctggatcgacgtggactcgccgtttcgtggtgagcagctgcag
gtgcagctggcgcggcatatctccacccgctaccaggaccgcgagcgttccctggcgccg
atcgttgcgctgctggttgagcagtatcgtcggcggccgggcaattacctggcgttcttc
agcagcttcgactacctgcaacaggtcgccgcgctgctcgccgaatgccaccccgacgtg
cctgtttggcagcagacccgaggcatgcaggagagcgcccgcgaggcttttcttgcgcgc
ttcgaggcgaacggacgtggtatcggcttcgccgtgcttggcggtgcgttcgccgaaggc
atcgacctaccgggcaatcggctgatcggcgcgttcgtcgcgacccttggtctgccgcag
gtcaacccggtcaacgaacagctcaaggcgcgtatggaggcggtattcggcaacggctac
gactacacctatctctaccccggcctgcagaaggtggttcaggctgccggtcgagtgatt
cgcaccacccaggacgaaggcgtcattcacctgatcgacgatcgttttgcccgcacacag
gtacgccgcctgttgccgtcgtggtgggaaatcggcagataa
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