Stutzerimonas degradans: GOM96_02020
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Entry
GOM96_02020 CDS
T08431
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GOM96_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_02020
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GOM96_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
QGW19813
LinkDB
All DBs
Position
complement(446471..447436)
Genome browser
AA seq
321 aa
AA seq
DB search
MPRTIWKGAVSFGLVHIPVALVPATTRTGIDFDWLDKRSMDRVGYKRINKTTGEDIDSDD
IVKGIEYEKGHYIVLSDDEIKAAHPKATQTVDIVAFVDAKDISFLYIDTPYYLTPDRRGE
KVYALLRETLIQTGKVGIANVVLRNKQHLAVVMPLGKALVMNTLRWADEVRGVEYLELKD
EALDPELAERELEMAKRLVEDMSEQWKPEQYKDTFQNQIMDLVEKKAREGKLEAVGGPEE
AVDRRGADVIDLTELLKRSLAAKPGKARAAADDAEDGAGEGEKASAKAKPSSKAKPKSTT
SRASKSAASEPRKTTPRKKAG
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcacgatctggaaaggtgccgtcagtttcggtctggtgcacatcccggtggca
ctggtgccggccaccacgcgcaccggcatcgatttcgactggctggacaagcgcagcatg
gaccgcgtcggctacaagcgcatcaacaagaccaccggcgaggacatcgacagcgatgac
atcgtcaaaggcatcgagtacgagaaaggccactacatcgtgctcagcgacgacgagatc
aaggccgcgcaccccaaggcgacgcagacggtggacatcgtcgccttcgtcgacgccaag
gacatttcctttctctacatcgacacgccttattacctgacgcccgaccggcgcggcgag
aaggtctacgcgctgctgcgcgagacgctgatccagaccggtaaggtcggcattgccaac
gtggtgctgcgcaacaagcagcacctggcggtggtgatgccgctgggcaaggcgctggtg
atgaatacgctgcgttgggccgacgaggtgcgtggcgtggaatatctggaactgaaggac
gaagcgctcgatcccgagttggccgagcgcgaactggagatggccaaacggctggtcgag
gacatgagcgagcagtggaagcccgaacagtacaaggacaccttccagaaccagatcatg
gatctggtggagaagaaggcccgcgaaggcaagctcgaagccgtcggcgggccggaggag
gccgtggaccggcgtggggcggacgtcatcgacctcaccgaactgctcaagcgcagcctg
gctgccaaaccgggcaaggcacgcgcagcagcggatgacgccgaggacggtgctggcgaa
ggtgagaaggcgtccgccaaggccaagccgtcgagcaaggccaagccgaagagcaccacc
tcccgcgcgagcaaatccgctgcaagcgagccgcgcaagaccacaccccgcaagaaggcc
ggatga
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integrated database retrieval system
