Stutzerimonas degradans: GOM96_02270
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Entry
GOM96_02270 CDS
T08431
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sdeg
Stutzerimonas degradans
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdeg03032
]
GOM96_02270
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_02270
Enzymes [BR:
sdeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GOM96_02270
DNA replication proteins [BR:
sdeg03032
]
Prokaryotic type
DNA Topoisomerases
GOM96_02270
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GOM96_02270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF3336
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
QGW19862
LinkDB
All DBs
Position
505886..506992
Genome browser
AA seq
368 aa
AA seq
DB search
MRNPAQGPKLPPQATGIRPVPKDESGDTGTPLCPALPAELNYVDDSQPGIRRRRLRGKFA
YYTAQGERITDEAQVRRINSLAIPPAYRDVWICTDPQGHLQATGRDARGRKQYRYHPRWR
EIRDSNKYERMLAFGETLPTLRKCLEQDLARSGMPREKVMALVVTLLESTLIRIGNPRYA
RDNRSYGLTTLRTRHVDIRGTAIRFQFRGKSGVEHQVTLRDRRLARLLRRCLELPGQQLF
QYLDDNGQRRTVGSGDINQYLRDLTGRDFTAKDYRTWAGSALALEHLRTRQWQTQSEARQ
QLVETVKQVASQLGNTPTVCRQCYIHPAILQAFTEGELADLKRARQRKWLSRQEVALLTF
LRSRADAQ
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaccctgcccagggtccgaagttgccgccgcaggcaaccggcatccgcccggtt
cccaaggacgaatcgggcgacacgggcacaccgctctgccctgcgctgccggcagagctg
aactacgtcgacgacagccagccgggcatccgacgcaggcgtttgcgcggcaagttcgcc
tattacaccgcgcagggcgaacgcatcaccgatgaggctcaggttcgccgcatcaacagt
ctcgccattccacccgcctatcgcgacgtctggatctgcaccgacccgcaaggtcacctg
caggccaccggacgggatgcgcgcggacgcaagcagtatcgttaccatccgcgctggcgc
gagatacgcgacagcaacaagtacgagcgcatgctggcattcggcgaaacgctgccaacg
ttacgcaaatgtctggaacaagacctggctcgcagcggtatgccacgcgagaaagtcatg
gcactggtggtgacgctgctcgaatccacgctgattcgcatcggcaatccgcgctacgcc
cgcgacaatcgctcctacggcctcaccacgctgcgcacccgccacgtcgacatacgcggc
acggcgatccgcttccagtttcgcggcaagagcggcgtcgaacaccaggtgaccctgcgt
gatcgacggctggcgcgcctgctgcggcgctgcctggagttgccgggacaacagctgttc
cagtacctggacgataatggccagcgccgcacagtcggctccggtgacatcaaccagtac
ctgcgcgatctgaccgggcgtgatttcactgccaaggactaccgcacctgggccggcagc
gcgctggcgctggagcacctacgcacccggcaatggcagacccaaagcgaggcgcgccag
caactggtcgagacggtgaagcaggtcgccagccagctgggcaacacgccgacggtatgc
cgccagtgctatatccacccggcgattctgcaggcattcaccgaaggcgagctggcggac
ctcaagcgcgcacgtcaacgcaagtggttgagccgtcaggaagtggccttgctgacgttt
ctgcgcagtcgtgccgacgcgcaatag
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