Stutzerimonas degradans: GOM96_02435
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Entry
GOM96_02435 CDS
T08431
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
sdeg
Stutzerimonas degradans
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdeg01011
]
GOM96_02435
Enzymes [BR:
sdeg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
GOM96_02435
Peptidoglycan biosynthesis and degradation proteins [BR:
sdeg01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
GOM96_02435
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GFIT
Motif
Pfam:
LysM
SLT
LysM_RLK
LysM3_LYK4_5
NMB0315_dom_I
HTH_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
QGW22949
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All DBs
Position
541381..542796
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AA seq
471 aa
AA seq
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MAPLTIEQDPLWLSDKSVAPEHEDIWERIRDGFMLQEHLDSNPRIEQQRLLFASRPGSVQ
TATARGGPYIHYIVERLEERDMPLELALLPVIESAYDPFAYSPAHAVGLWQFIPSTGRHF
NLRQTNWYDGRRDITASTNAALRYLSYLHGLFNGDWLLALAAYNAGEGTVSRAIERNQKL
GLPTDYWNLPLPRETRDYVPKLLALSQLVNAPEAYGITLSPIANEPYFEVVPLKQRMDLA
QIAQMADLDEDELYQLNPAFTRRITLDGPQQLLVPLDKAEMLTASLALMKPQDMASWQQY
SVRPGDTLNSIAERHQISVTTLRDLNRLRSNRLRIGQVLSIPSRLGSEPTGELLQAVARR
TPSTPRSYRVKAGDNLWDIAKAQRVSVRDLQRWNKLSGSSLKVGQALFLQGPAPASATKA
AAPTYYKVRKGDSLYQIAKRFNIHVSKLKTWNPKGTQVLRPGQLLTLYLPN
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtggcgccgctcaccatcgagcaggatcccctgtggctgtcggacaagtccgtggcgccg
gagcacgaggacatctgggaacgcattcgcgatggtttcatgctgcaggaacacctggac
agcaatccgcgcatcgaacagcagcgccttctgtttgccagtcgtcccggttccgttcaa
acggccaccgcccgcggtgggccgtacattcactacatcgtcgaacggctggaagagcgt
gacatgccgctggagctggcgctgctaccagtgatcgaaagcgcttacgaccccttcgcc
tactccccggcccacgcggtaggcctgtggcagttcatcccctctaccggccgccatttc
aacctgcgccagaccaattggtacgacggccgacgcgacatcactgcctcgaccaacgca
gccctgcgctacctgagctatctgcacgggctgttcaacggtgactggctcctggccctc
gcggcctacaacgcaggcgaaggaaccgtcagccgtgccatcgaacgcaaccagaagctc
gggctgccgaccgactactggaacctgccgctgccgcgcgaaacgcgtgactacgtcccc
aagctgcttgcgctctcgcaactggtcaacgcgccggaagcctatggcatcacgctcagc
ccaatcgcgaacgagccctacttcgaagtagtaccgttgaaacagcgtatggacttagcg
caaatcgcgcagatggcggatctcgatgaagacgagctttatcagctgaatccggcattc
actcggcgcatcactctcgatggcccgcagcagctgctggtaccgctggacaaggccgaa
atgctgactgccagcctggcgctgatgaagccgcaagacatggccagctggcagcagtac
agcgtacgcccgggcgacaccctcaacagcattgccgagcgtcatcaaatcagtgtcacc
acgcttcgcgacctcaatcgtctgcgcagcaaccggctacgcatcggtcaagtcctcagc
attccctcgcgcctaggcagcgaaccgacaggcgagttgctccaggcagtcgcgcgccgc
acgcctagcacaccgcgtagctatcgcgtcaaagccggcgacaacctatgggatatagcc
aaggcccagcgggtgtcggtacgcgatctgcagcgctggaacaagctctccggcagcagc
ctgaaggtaggccaggcgctctttctgcagggcccggcgcccgccagcgccaccaaggca
gcggcaccgacttactacaaggtgcgcaagggcgattcgctttaccagatcgccaaacgt
ttcaacatccacgtcagcaagctgaaaacctggaatcccaaggggacacaagtgctgcgc
cctggacagctgctcacgctctacctgccgaactga
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