Stutzerimonas degradans: GOM96_04530
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Entry
GOM96_04530 CDS
T08431
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GOM96_04530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeg03019
]
GOM96_04530
03009 Ribosome biogenesis [BR:
sdeg03009
]
GOM96_04530
Enzymes [BR:
sdeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GOM96_04530
Messenger RNA biogenesis [BR:
sdeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GOM96_04530
Ribosome biogenesis [BR:
sdeg03009
]
Prokaryotic type
rRNA helicases
GOM96_04530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGW20284
LinkDB
All DBs
Position
complement(1017597..1019267)
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AA seq
556 aa
AA seq
DB search
MTQEIGGFAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVGVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEARLPNAQQVLDARIKKLTNSLAPLVADAEATHGELLDKLVADIGCSPRAL
AAALLRKATNGQALTLAEVEKEQPLVPGSGPRERSERPDRPERSGDRERRAPMPLAEGRA
RCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLGKLKD
TRVGGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggctttgccgcactcggtattcattccgctgttctggctgcc
atcagcgcagtcggctacgaagaaccttcccccattcaggcccaggcgatcccggtgatc
ctcggtggccacgacatgatcggccaggcgcagaccggcaccggcaagaccgcggccttt
gcgctgccgatcctgtcgaagatcgatccggccaagcgcgagccgcaggcgctgatcctc
gcgccgacccgcgaactggcgctgcaggtcgccaccgcgttcgagacctattccaagcag
atgcccggtgttggcgtcgtcgccgtctacggtggtgccccgatgggcccgcagctcaag
gccatccgccagggcgcgcaggtcatcgtcgccactccaggccgcctggtcgaccacctg
agccgtaacagcgagctgctgtcgaccatccgcttcctggtcctcgacgaagccgacgag
atgctcaagctcggcttcatggacgatctggaagtgatcttcgaagccatgccggaaagc
cgccagagcgtgctgttctccgccacgctgccgcattccatccgcgccatcgccgagaag
cacctgcgcgagccgcagcacatcaagatcgccgccaagacccagaccgtcgcccgcatc
gagcaggcgcacctgatggtccacgccgaccagaagatccaggccgtgctgcgcctgctg
gaagtcgaggatttcgacgcgctgatcgctttcgtgcgcaccaagcaggccactctggat
ctggccgccgcgctggaagccaagggctacaaggccgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgttatcgaatcgctcaaggatggccgtctggacatcgtcgtg
gctaccgacgtcgccgcccgtggcctggatgtggcgcgcatcacccatgtgttcaacgtg
gacatgccctacgatccggaatcctacgtgcaccgcatcggtcgtaccggccgtgccggt
cgcgaaggccgcgcgctgctgctggtcactccgcgtgagcgccgcatgctgcaggttatc
gagcgcgtaaccaaccagaaggtcgccgaggctcgtctgcccaacgcccagcaggtgttg
gacgcgcgcatcaagaagctcaccaacagcctcgcgccgctggtcgccgatgcagaagcc
acgcatggcgaactgctcgacaagctggtcgccgatatcggctgcagcccgcgtgccctc
gccgctgcgctgctgcgcaaggccaccaatggccaggcgctgaccctggccgaagtggaa
aaagagcagccgctggtgccgggtagtggcccgcgtgagcgttccgagcgccccgaccgt
cctgagcgtagtggtgatcgcgagcgtcgcgcgccaatgccgctggccgaaggacgcgcg
cgttgccgcacgccgctgggtgcgcgtgatggcatcgctgcgcgcaacctgctcggtgcg
atcctcaacgagggcggcctggcccgcgaagccattggtcgcatccaggtgcgcgacagc
ttcagcctggtcgaactgccggaagaaggtctcgagcgcctgctcggcaagctcaaggac
acccgcgtgggtggcaagcagctcaagctgcgtcgctatcgcgaagactga
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