Stutzerimonas degradans: GOM96_05125
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Entry
GOM96_05125 CDS
T08431
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GOM96_05125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeg03019
]
GOM96_05125
03009 Ribosome biogenesis [BR:
sdeg03009
]
GOM96_05125
Enzymes [BR:
sdeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GOM96_05125
Messenger RNA biogenesis [BR:
sdeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GOM96_05125
Ribosome biogenesis [BR:
sdeg03009
]
Prokaryotic type
rRNA processing factors
GOM96_05125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QGW22974
LinkDB
All DBs
Position
1124133..1127138
Genome browser
AA seq
1001 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFSKAPEGRVNIKEVLKEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGINVPADMGLIVRTAGLGRSSEELQWDLD
YLLQLWTAVKDASQGRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQ
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREA
LEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQ
RLRDDSPEIAAGHASYEMSHSEAEEVQPVSSTRTLVRQEAAVKTAPQRSTPAPAPAATTA
VEAPAPAATPEPSLFKGLIKSLVGLFAGKQEEPKAAVTAETKPAGNRTPRNEERRSGRQQ
NRRRDGRGRDEERAPREERKPREERASREERQPREERQPRPPREERKPREQLETAEAQPR
RERGPREERQPREERKRELRAPLDEASALETPSEELTERKPRPPREERKPRAEQVPSEEE
LQQNEENAEEDQEATDGERPRRRSRGQRRRSNRRERQRDADGNEIAEAGEDNAPVKSEDI
AVAATAAAIVASAEAEPQADTSSAAEVATAAETEAVIESTTVAEEAPQAAIEHPATLVEE
QPAVAAETIAETPETAVVEPAAEAPAPVEPSAEQTAPAVAPSGRAPNDPREVRRRQREAE
RLAALAAAAPVQAEQEAPSIAQQPLAAAEIVVSEPEIAAPQTETKAEVQPSEQPEPQAAP
SEPEQAVSAHEPHAVAEPAPEVEQAPLPEQGEQDDKDKPQA
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgctaattaacgcaactcagcccgaagagttgcgtgtcgcactggtcgatggccagcgg
ctgttcgacctggacatcgagtccggtgcacgcgaacagaagaaggccaacatctacaag
ggcaaaatcacccgcgtagaacccagcctggaagctgccttcgtcgatttcggcgccgag
cgccacggcttcctcccgctcaaggaaatttcccgcgagtacttctccaaggcccctgaa
ggccgcgtcaacatcaaggaagtgctgaaggaaggccaggaagtcatcgtccaggtcgaa
aaggaagagcgcggcaacaaaggcgccgctctgaccaccttcatcagcctcgccggtcgc
tatctggtattgatgcccaacaacccgcgtgcgggtggcatctcccgccgcatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctcaacggcatcaatgtgccggccgatatgggt
ctgatcgtgcgcaccgccggtctgggtcgttccagcgaagagctgcagtgggacctggac
tacctgctgcaactgtggaccgcggtcaaggacgcctcgcagggccgcgctgcgccgttc
ctgatctaccaagaatccaatgtcatcatccgcgccatccgcgattacctacgccaggac
atcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagcgctttccttcatccag
caggtcatgccgcagtacgccagcaagatcaagctgtacgaagactccgttccgctgttc
aaccgcttccagatcgaaagccagatcgaaacggccttccagcgtgaagtgaaactgccg
tccggcggctccattgtcatcgacccgaccgaagccctggtatccatcgacatcaactcg
gcgcgcgccaccaagggcggcgatatcgaggaaaccgcgctgcagaccaacctggaagca
gccgaagaaatcgcccgtcagctgcgcctgcgcgacatcggcggtctgatcgtgatcgac
ttcatcgacatgaccccggcgaaaaaccagcgcgccgtcgaagagaagatgcgcgaagcg
ctggaagccgaccgcgcgcgcatccaggtcgggcgtatttcgcgcttcggcctgctggag
atgtcccgccagcgcctgcgcccgtcgctcggcgagaccagcggcatcgtctgcccgcgc
tgtaatggccaggggatcattcgcgacgtcgagtcgttgtcgctggcgattctgcgcctg
atcgaggaagaggcgctgaaggaccgcaccgccgaagtccgcgcccgtgtgccgttccag
gttgcggcattcctgctcaacgaaaagcgcaacgccatcaccaaaatcgaactgcgcacc
cgcgcacgcatcttcatcctgccggacgatcacctggaaacgccgcacttcgaagtccag
cgcctgcgtgacgacagcccggagatcgccgctggccacgccagctacgagatgagccac
agcgaagccgaggaagtccagccggtcagctcgacccgtacattggtacgtcaagaggcc
gcggtgaagaccgcgccgcagcgcagcacacccgctccggcaccggccgcaacgacggcc
gtcgaggcaccggcgcctgccgccacgcccgagccgagcctgttcaagggactgatcaag
tcgctggtcggcttgttcgccggcaagcaggaagagccgaaagcagccgttaccgccgag
accaagccggccggcaatcgcacgccgcgcaatgaagagcgtcgcagcggacgtcagcaa
aatcgtcgtcgtgacggccgtggtcgcgacgaggaacgcgcaccgcgtgaggaacgcaag
ccgcgtgaagagcgcgcctcccgtgaggagcgccaaccgcgcgaagaacgccagccgcga
ccgcctcgcgaggagcgcaagccgcgcgagcagctcgaaaccgccgaagctcagccgcgc
cgtgaacgcggcccgcgtgaagaacgccagccgcgcgaggagcgcaagcgcgaactgcgc
gcgccgctggatgaagccagcgcactggagactccaagcgaagagctgaccgaacgcaag
cctcgaccaccgcgtgaggaacgcaagccgcgtgccgagcaggtacccagcgaggaagag
ctgcagcagaacgaggaaaacgccgaggaagaccaggaagccaccgacggcgagcgtccc
cgtcgccgttcccgcggtcagcgccgccgcagcaatcgtcgcgagcgtcagcgtgacgcc
gatggcaacgaaatcgccgaagctggcgaagacaacgcgccggtgaagagcgaggacatc
gccgtcgctgccacggccgccgccatcgtcgcaagcgccgaagcggagccgcaagccgac
acgtcgtcggcagccgaagtcgccaccgctgcagagaccgaagcagttatcgagagtacg
actgtcgccgaagaagcaccgcaagcagcgatcgagcaccccgcgacgcttgttgaagag
cagccggccgtcgcagctgaaaccattgcggaaacgccggaaactgcggtcgtcgagccg
gcggcggaagcgcctgcgccggtcgagccgagcgccgagcaaacggcaccggcagtcgcg
cccagtggtcgcgcacccaacgacccgcgagaggtacgccgtcgtcagcgcgaagccgag
cgccttgcggcactggctgccgcggcgccggtgcaagccgaacaagaagctccgagcatc
gcgcagcagccgctggccgctgcagagatcgtcgtgagcgagcccgagattgccgcgccg
caaaccgaaacaaaggccgaggtgcaaccatcggaacagcctgaaccgcaagcagccccg
agcgaaccggagcaggctgtgtcggcgcacgagccacacgctgtcgcggagcccgcgccg
gaagtcgagcaggcgccgctgcctgaacaaggcgagcaagacgacaaggacaagcctcag
gcctga
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