Stutzerimonas degradans: GOM96_07420
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Entry
GOM96_07420 CDS
T08431
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sdeg
Stutzerimonas degradans
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_07420
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GOM96_07420
Archaeal homologous recombinant proteins
GOM96_07420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SbcC_Walker_B
AAA_29
AAA_21
nSTAND3
ABC_tran
AAA_15
Motif
Other DBs
NCBI-ProteinID:
QGW20809
LinkDB
All DBs
Position
1602154..1605798
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGEQVIDFTAEPLASAGLFAITGPTGAGKSTILDALCLALFGSTPR
LESVTTQGKVPDGSDDIGNTDERNLLRRGCGSGYAEVDFVGVDGHRYRARWEVKRAREKI
DGRLQASSQSLTDLDSGTLLASGKKREFKELLEARLGLTLAQFTRAVLLAQSEFSAFLKA
DDNERGTLLEKLTDTGLYSRLGQAAFEAAKEAKEGLARLEQQAGGLQPLEPEQREVLENE
HQAQLDELKALQQQLKALEAQRQWLSELQRLENEREAACQQLQDAEDERENLAEARRILD
LFEQLAPQRHRFLRLQDLGPLLDKAADSLARLQHEEQAVQQRLAELQSQCSAASEQLRSA
EQARQDAEPRLVQARREEERLQHLNADLAAIREDSTRADAEVTAGAATLTQLAERQQRAA
AELAALSQQLDKSAALQPLCSAWDGYRPRLQQAVQLAARLQQGQGELPALEARAKAAENQ
QSLAREALDNLQRERDSNVGLAEQLARLHRQLDDWRQAERETDALQQLWAQQLTLVASQR
ELADAATVQQTELDNLVPLGKQVRIDRDAAEQALTVTLALLERQRLARSENVEALRAALI
PGEPCPVCGSHEHPWQQTDALVASLARHDDSEAERARQALQQQDQRLQELRDRHVALSTQ
LRQTQQRQSEVDAQLQALAPRLLALPAHARLLEQPEAERSPWLETQLTTLKGQITSASQR
QQQLLALQQRSETLQQAWQTAREACVEATQQLARQRDALARDSLQLEEELAAFAELLPVE
QLQRWREDPAQTFMQLDASIATRLQQLQTQAELAEELRQCEQRRSDEQLQQRHRQEKQAG
CNARLAEREKLLLACQQALRTSLGEHGSASAWQQQLDATIQAARQTQAEIDQQLNESKLG
LTRLHSEQQNCRQRHAELQQERDALNAELDAWRAAHPALDDTTLAQLLQMDDALLVEARQ
RLQQNAETLTRCRERLDGCLNRLASHQQQQAEAPEAEQLQQAHAEQLQRCEQAEQRCAET
RAALLDDDKRRSQSRALLAQIDAARAEHQRWGRIAALIGSSDGGAFRKIAQAYNLDLLVQ
HANVQLRQLARRYRLKRGGSPLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSKLKIESLFIDEGFGSLDPESLQIAMDALDSLQAQGRKVAVISHVAEMHERIPVQIQV
QRQGNGQSALKIVG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcgccatccgcctgaagaacctggcgtcgctggccggtgagcaggtcatc
gatttcaccgccgaacccctggccagcgccgggctgttcgccatcaccgggcccaccggt
gccggcaagagcaccattctcgacgccctgtgcctggcgctgtttggcagcacgccgcgg
ctggaaagcgtaaccacgcaaggcaaggtcccggatggtagcgacgatatcggcaatacc
gacgagcgcaacctgctgcgccgcggctgcggcagcggctacgccgaggtcgatttcgtc
ggcgtcgacggccaccgctaccgcgcacgctgggaggtcaagcgcgcccgcgagaagatc
gacggccgcctgcaggccagcagccagagccttacggatctcgacagcggcacgctcctg
gccagcggcaagaaacgcgaattcaaggaattgctcgaagcccgccttggactgaccctg
gcccagttcacccgcgccgtgctgctggcgcagagcgaattttccgccttcctcaaggcc
gacgacaacgagcgcggcaccctcctggaaaagctcaccgataccggcctctacagccgc
ctcggccaggccgccttcgaggccgccaaggaggcgaaggaaggcctcgcccgtctggag
cagcaggccggcggcctgcaaccactggagcccgagcagcgcgaggttctggagaacgaa
catcaggctcagctcgacgaactgaaagcgctgcagcagcagctcaaggcgctggaagcg
cagcggcaatggctcagcgaactgcagcgcctggaaaacgagcgcgaagcggcatgccag
caactgcaggatgccgaagacgagcgcgaaaacctcgccgaggcccggcgcatcctcgac
ctgttcgagcaactggcgccgcaacgccatcgtttcctgcgcctgcaggatctcggcccg
ctgctggacaaggccgccgacagcctggcgcgcctgcagcatgaggaacaggccgtgcag
cagcgcctggccgagctgcagagccaatgcagcgccgccagcgagcaactgcgttcggcc
gaacaagcgcgccaggacgccgagccgcggctcgtccaggcgcgccgtgaggaggaacgc
ctgcagcatctgaacgccgacctagccgctatccgcgaggacagcacccgggccgatgcc
gaggtgactgcaggcgcagcgacgctcacgcagctcgccgagcgccagcagcgcgccgcc
gcggaacttgccgcgctgagccagcaactggacaagagcgccgcgctgcaaccgctctgc
agcgcctgggacggctatcgcccgcggctgcaacaggccgtgcagctggcggcacggctg
cagcaaggtcagggcgagctcccggcactggaagcgcgggccaaggccgccgaaaaccag
caaagcctggcccgcgaggcactggacaacttgcaacgcgagcgcgacagcaacgtcggg
ctggccgaacagctggcccggctgcatcgacagctcgacgactggcgccaggccgagcgc
gaaaccgatgcgctacagcagctctgggcgcagcagctgacgctcgtcgccagccagcgc
gaactggccgacgccgccaccgtgcagcagaccgagctggacaaccttgtcccgctgggc
aaacaggtccgcatcgatcgagatgcggccgagcaggcgctcacggtcacccttgcgctg
ctcgaacgccagcgtctggcacgcagcgagaatgtcgaggcgctgcgcgcggcgctgatc
cccggcgagccctgcccggtctgcggcagccacgagcatccctggcaacagaccgatgcg
ctggtcgccagccttgctcggcacgatgacagcgaggccgagcgcgcgcgtcaggcatta
cagcaacaggaccagcgcctgcaggagctgcgcgatcgccatgtcgcgctcagcacgcag
ttgcgccagacccagcagcgccagagcgaagtcgacgcgcagctgcaggccctggcgccg
cgcctgctcgccctgcctgcgcatgcacgattgcttgagcagcctgaagccgagcgttcg
ccatggttggaaacgcagctgacgacactcaaaggccagatcaccagcgccagccagcgt
cagcagcaattgctcgccctgcaacagcgcagcgaaaccctgcagcaagcctggcagacc
gcgcgcgaggcctgtgtcgaggcgactcaacagctcgcgcgccagcgcgatgccttggcc
cgcgacagcctacaactcgaggaggagctggcggcctttgccgaactgctgcccgtcgag
caactgcagcgctggcgcgaagatccggcgcagacctttatgcagctggacgccagcatc
gccacgcgattgcagcaactgcagacgcaagccgagctggccgaggagctgcgccagtgc
gagcagcgccgcagcgacgaacagctgcagcagcgccatcgccaggagaagcaggctggc
tgcaacgcgcgactggctgagcgcgaaaagcttctgctcgcctgccagcaggcgctgcgg
accagccttggcgagcatggcagcgccagcgcctggcaacagcagctggacgcaaccatc
caggctgcgcggcaaacccaggccgagatcgaccagcaactcaacgagagcaaacttggc
ctgacgcgcctgcacagcgagcaacagaactgtcgccagcgccacgccgaattgcagcag
gaacgcgacgcgctgaacgcggaactggacgcctggcgcgccgcccatccggcgctggac
gacaccaccctcgcccagctgctgcagatggacgacgcgctgctggtcgaggcgcgccag
cgcctgcagcagaacgccgaaaccctgacccgctgccgcgaacggctggatggctgcctc
aatcggctggccagccaccagcagcaacaggccgaggcgccggaagccgagcagctgcaa
caggcacatgccgaacagctgcagcgctgcgaacaggccgagcagcgctgcgccgaaacc
cgcgccgcgctgctcgacgacgacaagcgtcgtagccaaagccgggcgctgctggcgcag
atcgacgccgcgcgggccgagcatcagcgctggggccgcatcgccgccttgatcggctcg
agcgacggcggcgccttccgcaagatcgcccaggcctacaacctcgacctgctggtgcag
cacgccaacgtgcagctgcgccagctggcccggcgctaccggctcaagcgcggcggaagt
ccgctgggcctgctggtgatggataccgagatgggcgacgagctgcgctcggtgcattcg
ctgtccggcggcgaaaccttcctcgtctcgctggcgctggcactgggcctggcctcgatg
gcctcgagcaagctgaagatcgagtcgctgttcatcgacgaaggcttcggcagcctcgac
cccgagtcgctgcagatcgccatggacgcgctggattcgctgcaagcccagggccgcaag
gtggcggtgatcagccacgtcgccgagatgcacgaacgcatcccggtgcagatccaggta
cagcgccagggcaacggccagagtgcgctgaagatcgtcggttga
DBGET
integrated database retrieval system
