Stutzerimonas degradans: GOM96_07715
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Entry
GOM96_07715 CDS
T08431
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GOM96_07715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeg03019
]
GOM96_07715
03016 Transfer RNA biogenesis [BR:
sdeg03016
]
GOM96_07715
Enzymes [BR:
sdeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GOM96_07715
Messenger RNA biogenesis [BR:
sdeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GOM96_07715
Transfer RNA biogenesis [BR:
sdeg03016
]
Prokaryotic type
tRNA degradation factors
GOM96_07715
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
QGW20863
LinkDB
All DBs
Position
complement(1669259..1671796)
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AA seq
845 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILRHLSERGSPAAREQLVEEFGLVSDEDVEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLGPAQMR
LVFDGDRCLARVSGLDRRGRREGAIVEVISRAHETIVGRYQIESDVGFVVADNPKIQQEV
LVTPGRALNAKPGQFVEVKITHWPTPRFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHV
WPEAVLKEAARLKPEVDEKDKLKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTG
GFRLYVAIADVSHYVKVGSALDHEAEVRGNSVYFPERVVPMLPEQLSNGLCSLNPGVDRL
AMVCEITLNKSGKMTDYQFYEAVIHSHARLTYNKVSDMLERPKSPEGKRLSEEYAEVLPH
LKQLYALYKVLLKARHTRGAIDFETQETRIVFGAGRKIAEIKPTERNDAHKLIEECMLCA
NVATAAFLQKHDIPALYRVHDGPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLER
IQDRPDFHVIQTVMLRSLSQAVYSADNHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSV
IRSRRDTPHVRREGAASMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVVNWLKCEF
MRDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSGR
SFRLGDSVEVRVMRVDLDERKIDFELIGGGSKVVSVGEGGARKGGAARGKAGDDRRSARS
QEPADASVRKSRELKQALLSEAKGKSGRDRGAEKPKRGGSKRKADGKPAPGGSSPAGARK
RKAKP
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgcccgtgaagcggaaaagtacgataac
cccattcccagccgcgaactgatcctccggcacctgtctgagcgtggctcaccggccgcg
cgcgaacagctggtcgaagagttcggcctggtttccgatgaggacgtcgaggcactgcgt
cgtcgactgcgcgcgatggagcgcgacggtcagcttatctacacccgacgcggaacctac
gcgccagtggacaagctcgatctggtctgtggccgagtcagcggtcatcgcgatggcttc
ggcttcctgattcccgatgacggtagcgatgacctctttctcgggccggcgcagatgcgc
ctggttttcgatggcgatcgctgcctggcgcgggtgtccgggctggatcggcgtggacgt
cgcgagggggcgattgtcgaggtcatcagtcgagcccatgaaaccatcgtcgggcgctat
cagatcgagagcgacgtcggcttcgtggttgccgataatcccaagatccagcaggaggtc
ctggtcacgccgggccgcgcgctgaatgccaagcccggtcagttcgtcgaggtgaagatt
acccactggcccaccccgcgcttccagccgcagggggacatcgtcgaggtgatcggtaac
tatatggcgccggggatggaaatcgacgtggcgctgcgcagcttcgatatcccccatgtg
tggcccgaggcggtactcaaggaagcggcgcggctcaagcccgaggtggacgagaaggac
aagctcaagcgcgtcgacctgcggcatctgcccttcgtcaccatcgacggcgaggatgcg
cgagacttcgatgacgcggtctactgcgagaagcccggcggttggaagctgctgaccggt
gggttccgcctgtacgtcgccatcgccgacgtctcgcactatgtgaaggtcggttcggcg
ctggatcacgaagccgaggtgcgcggcaactcggtgtatttccctgagcgggtggtgccg
atgctgcccgagcagctgtccaacggcctgtgctcgctgaatcctggcgtggaccgtctg
gcgatggtctgcgagatcaccctgaacaagtcgggcaagatgaccgactaccaattctac
gaggcggtgattcactcccatgcgcggctgacctacaacaaggtcagcgatatgctcgag
cggcccaaatctcccgagggcaagcggctgagcgaggagtacgccgaggtgctgccgcat
ctcaagcagctttatgcgctgtacaaggtgctgctgaaggcgcgtcacacgcggggtgcg
atcgatttcgagacccaggagacgcgtatcgttttcggcgccggacgcaagatcgccgaa
atcaagccgaccgagcgcaacgacgcgcacaagctgatcgaggaatgcatgctgtgcgcc
aacgtggccaccgccgccttcctgcagaagcacgacatccccgccctgtatcgcgtgcac
gacggtccgccgctggagcgtcaggagaagctgcgcgccttcctgggcgaactgggcctg
agtctgcacaagggcaaggagggtccgacgccgaaggattaccaggctctgctggagcgc
attcaggatcgtccggatttccacgtgatccagacggtcatgctgcgttcgttgagtcag
gcggtctacagcgccgacaaccatggccacttcggcctgaactacgaagcctacgcccac
ttcacctcgccgatccggcgctatccggatctgctggtacaccgcgcgattcgcagtgtg
atccgttcgcgacgcgacacgccgcacgtgcggcgcgagggcgcggcgagcatgcccaag
gcgcgtatctacccctacgacgaggcggcgctggaacagctcggcgagcagtgttcgatg
accgagcggcgcgccgacgaggctacccgcgacgtcgtcaactggctcaagtgcgagttc
atgcgcgatcgtgtcggcgaaacgttccccggcgtgatcaccgcagtgaccgggttcggc
ctgttcgtcgagctgaccgatatctatgtcgaaggtctggtgcacgtcacggcgatgccg
ggcgactactaccacttcgatccgctgcatcatcgtctctccggcgagcggagcgggcgc
agtttccgtctcggcgacagcgtcgaggtgcgggtgatgcgtgtggatctggacgaacgc
aagatcgacttcgagctgatcggcggcggcagcaaggtcgtcagcgtgggcgagggtggt
gcgcgcaagggtggcgcggcgcgcggcaaggctggtgatgatcggcgttcggcgcgcagc
caggaaccggccgatgccagcgtacgcaagagccgtgagctgaagcaggcgctgctgtcc
gaagccaagggcaagagcgggcgcgaccgtggcgcggaaaaacccaagcgtggcggctcg
aagcgcaaggctgacggcaagccggctcccggcggttcgagccctgccggtgcgagaaaa
cgcaaggccaaaccatga
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