Stutzerimonas degradans: GOM96_09290
Help
Entry
GOM96_09290 CDS
T08431
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GOM96_09290 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_09290 (recD)
Enzymes [BR:
sdeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GOM96_09290 (recD)
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GOM96_09290 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
Helicase_RecD
AAA_22
SLFN-g3_helicase
AAA_16
UvrD_C
nSTAND3
CbiA
AAA_28
DEAD
AAA_5
DUF87
ATPase
Terminase_6N
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QGW21165
LinkDB
All DBs
Position
complement(2017183..2019030)
Genome browser
AA seq
615 aa
AA seq
DB search
MADIAATLAQLPLGALERAFIASLQRLEPAAPAPVLLAAALCCEALGNGDVCLPLARLAG
RRPWPEHDIRLPALADWRAGLRASSLVGAPGAYAPLILDGERLYLARYQAYERQLAEQLL
ARAGDRPPVDEAQLGESLARLFAFNQQRPDWQRLAAAQAVRRRLAVISGGPGTGKTTTVV
RLLAALLEQPGGERLAIGLAAPTGKAAARMAEAIRHAKAELPVSDAVKAALPDEARTLHR
LLGSRGDSPRVRHDAANPLPLDVLVVDEASMVDLALMAKLVAALPPKARLILLGDKDQLA
AVEAGAVFAELCEGRGFDAEAAADLERITGQAVAVETPHSRLGDAVVLLTHSHRFAGGSG
IGELARRINGGDARGTLALLDEARADLRWNAAPAAPALVERLEASYRPYLQAAQQGDPAQ
AFAAFNDFRALTAQREGAFGVNGLNEALEARLRRRAGVSVRERWYAGRAVMVRQNDYALG
LFNGDIGLCLWTEFGWRVFFEGDEGHRAFAPARLPSHDSAFVMTVHKSQGSEFGDVLLAL
PEQPGPLLTRALFYTGITRAKRTVEIWALPARLTEAVNTRAERAAGLAERLAADPPATAK
PAEGASGAQDQLSLF
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggccgacatcgccgcaacgctggcgcaactgccgctgggtgcgctggagcgcgccttc
atcgccagcctgcagcgcctcgagccggcggcgccggcgccggttctgctggccgccgcg
ctgtgctgcgaggcgctgggcaatggcgatgtctgcctgccgctggcgcgcctggccggg
cgcagaccgtggccggagcacgacatccgcctgccggccctggctgactggcgcgccggc
ctgcgcgcctcgtcgctggtcggcgcgcccggcgcctacgcgccgctgatcctcgacggc
gaacggctctacctcgcccgttaccaggcctacgagcggcagctggccgaacagttgctg
gcgcgtgccggcgatcggccgccggtcgatgaagcgcagctcggcgagagccttgcgcgg
ctgttcgccttcaatcagcagcgcccggactggcaacgtctggccgcggcgcaggcggta
cgccggcggctggcggtgatctccggcggccccggcaccggcaagaccaccaccgtggtg
cgcctgctcgcggcactgctggaacagcccggcggcgagcggctggccatcggcctggcc
gcacccaccggcaaggcggcggcgcgcatggccgaggcgatccgccacgccaaggccgag
ctgccggtcagcgacgcggtcaaggcggcgctgccggacgaggcgcgcaccctgcaccgc
ctgctcggcagccgcggcgacagtccgcgggtgcgccacgacgcggccaatccgctgccg
ctcgacgtgctggtggtggacgaggcgtcgatggtcgacctggcgctgatggccaagctg
gtcgccgcgctgccacccaaggcgcggctgatcctgctcggtgacaaggaccaactcgcc
gccgtggaagccggcgcggtgttcgccgagctctgcgaagggcgcggcttcgatgccgag
gcggcggccgatctcgagcgcatcaccggccaggccgtggcggtcgagacaccgcactcg
cgcctcggcgatgcggtggtgctgctgacgcacagtcatcgcttcgccggtggcagcggt
attggcgagctggcgcggcggatcaacggcggcgacgcgcgcggcacgctggcgttgctg
gacgaggcgcgggccgatctgcgctggaacgcggctcccgccgcgccggcgctggtcgag
cgcctggaggcgagttatcggccctacttgcaggccgcgcagcagggcgatccggcacag
gcgtttgcggcgttcaacgatttccgcgcactcaccgcgcagcgcgaaggcgccttcggc
gtcaacggcctcaacgaggcgctggaggcacggctgcggcgccgtgccggtgtgtcggtg
cgtgagcgctggtatgccggccgcgcggtgatggtgcggcagaacgactacgcgctcggc
ctgttcaacggcgacatcggcctgtgcctgtggaccgaattcggctggcgggtgttcttc
gagggtgacgagggccatcgcgcgttcgccccggcgcgcctgccgagccacgacagcgcc
ttcgtcatgacggtgcacaagagccagggttcggagttcggcgacgtgctgctggcgcta
cccgagcagcccggcccgttgctgacccgcgcgctgttctacaccggcatcacccgcgcc
aagcgcacggtggaaatctgggcattgccggcgcggctgaccgaggccgtgaatacccgc
gccgaacgcgcggccgggctggccgaacggctggctgccgacccgcctgcgacggcgaag
ccggcggaaggcgcgagcggcgcgcaggatcagctcagtctgttctga
DBGET
integrated database retrieval system
