Stutzerimonas degradans: GOM96_09295
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Entry
GOM96_09295 CDS
T08431
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GOM96_09295 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_09295 (recB)
Enzymes [BR:
sdeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GOM96_09295 (recB)
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GOM96_09295 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QGW21166
LinkDB
All DBs
Position
complement(2019030..2022578)
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AA seq
1182 aa
AA seq
DB search
MSLDLLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELR
ERIRARLATLLTVYDGTPSDDDFLNRLHARFPDDASRRRLLLAVHGFDEAAVFTIHGFCQ
RALQDAAFEAGGDFDSELAADDRELIDALLTDAWRGELAAADPAWARLLAKQKITPQWLR
QRLRAHLGKPYLRVEPHEPPAPADSRAVEAAWQRAATLWQQHGGAWVAELDAHRGLSQST
HKALKFSLWRSELDAWFADPAALYDAPDGLLKFGARALAKACKKGFDAPDCALAQALDEL
ADRLAEALPAGRQRLVALQVALLERLNRELPERKAAQRLLAFDDLLNRLDQALRGPVGED
LAAALRSTYPLALIDEFQDTDPIQYAIFDRIYARGSGASLCFVGDPKQAIYAFRGADLAT
YLQARQQIDRPAYDLPVNHRSTPQLIDALNRLFARPRPFSEDGLDYPPVTAADKSRATLR
LHEDEAGAPLALVWLGDDALSKAEAAELAARDCARRIARQLAAAAEGRAGFEQDGQFSPL
KGGDIAVLVANHRQAALIAEQLAARGVPSVRRGRDSVWASEEAAELAAVLAAYAEPGREG
LLRHALATRLLGRSAADLARCQDDQQQWDSEREAAERYHQLWQQQGFMRVFRAWLDEQAV
AERLLARLDGERRLTNLLHLGELLQAESLLRPGLEPLLAWFNAQRGGEGAGDEALLRLES
DAERVQIVTIHTSKGLEYPLVFCPFLWDGKLLGKNLDSARCHDEHGRPLLDLGSAELPDN
LQRARRETFAEQLRLAYVALTRARDRLWLHWGPVALPKAKKDGELPEEGLHSSALAWLLH
GRELAGADALGELGHHLAALDGAGLRGEVERLTQASAGSTACLPLETREASTADSLRAVA
PRQLARLERSLHSAWRIGSFSGLAAGLHMEAPDRDALVMPDAAEPGSGFFAFPRGARAGT
CLHAILEDWARGRGALAERVEPALQAFGLPLEWRDIAIAQLQQVLTTDLDGAGLTLAGLH
AARRLPELGFTFPVRQLDVTRLRALLADPASGLPAPLREAAARLEFDTLRGFLKGFIDLT
FEHDGRWYIADYKSNWLGPDASYYGGERLLQALAGEHYYLQYLIYLVALRRFLRQRLADF
RDEQLGGAFYLFLRGMPAAGVYFARPDDALLDALDRLFEEGH
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggacctgctcgattcgccgttcgacggccgctcgctgatcgaggccagcgcc
ggcaccggcaagacctggacgctcactgcgctctacgcacggctgttgctggagcgccag
ctatcggtggggcagattctggtggtcacctacaccaccgccgccaccgccgaactgcgc
gagcgcatccgcgcgcgactggccacgctgctgacggtctatgacggcacgccgagcgac
gacgacttcctcaaccggctgcacgcgcgcttccccgacgacgcctcgcgccggcgcctg
ctgctcgccgtgcacggcttcgacgaggccgcggtattcaccatccacggcttctgccag
cgtgccctgcaggacgccgccttcgaggccggcggcgacttcgacagtgaactcgccgcc
gacgaccgcgaactgatcgacgcgctgctgaccgatgcctggcgtggcgagctggccgcc
gccgatccggcgtgggcgcgcctgctggccaagcagaagatcaccccgcaatggctgcgc
cagcgcctgcgcgcgcatctgggcaagccgtacctgcgggtcgagccgcacgagccgccg
gcgcctgccgacagtcgcgccgtcgaggccgcctggcagcgcgccgccacgctctggcag
cagcacggcggcgcctgggtggcggaactcgatgcccatcgcgggctgagccagagcacc
cacaaggcgctgaagttttcgctctggcgcagcgagctggatgcctggttcgccgatccg
gcagcgctctacgacgccccggacggcctgctcaagttcggcgcgcgggcgctcgccaag
gcctgcaagaagggtttcgatgctcccgactgcgcgctggcgcaggcgctggatgaactc
gccgaccggcttgccgaggcgctgccggccggccgccaacggctggtcgcgctgcaggtg
gcgctgctcgaacggctcaaccgcgagctgcccgagcgcaaggcggcgcagcgcctgctg
gccttcgacgacctgctcaaccgcctcgaccaggcgctgcgggggccggtgggcgaggac
ctggccgccgcgctgcgcagcacgtacccgctggcgctgatcgacgaattccaggacacc
gatccgatccagtacgccatcttcgatcgcatctacgcgcgcggcagcggcgcctcgctg
tgcttcgtcggtgaccccaagcaggcgatctacgccttccgcggcgccgatctggcgacc
tatttgcaggctcgccagcagatcgaccggccggcctatgacctgccggtgaaccaccgt
tcgacgccgcaactgattgatgcgctgaatcgcctgttcgcgcgcccgcggccgttctcc
gaggacgggctggactatccaccggtcaccgctgccgacaagtcacgcgccaccctgcgt
ctgcacgaagatgaagccggcgcgccgctggcgctggtctggctcggcgacgatgcgctg
agcaaggcggaggcggccgaactcgccgcccgcgactgtgcccggcgcatcgcgcggcaa
ctggccgccgctgccgagggccgcgccggcttcgagcaggacggccagttcagcccgctc
aagggcggcgacatcgccgtgctggtggccaaccaccggcaggccgcgctgatcgccgag
cagctggcggcccgcggcgtacctagcgtgcgccgcgggcgcgacagcgtctgggccagc
gaggaggccgccgagctggccgcggtgctggccgcctacgccgagccgggccgcgaaggc
ctgctgcgccacgccctggccacgcgcctgctggggcggagcgccgccgatctggcgcgc
tgccaggacgatcagcagcaatgggacagcgagcgtgaggcggccgagcgctaccaccag
ctctggcagcagcagggcttcatgcgtgtgttccgcgcctggctcgacgagcaggcggtg
gccgagcggctgctggcgcgcctcgacggcgagcgccggctgaccaacctgctgcacctg
ggcgagctgctgcaggccgagagcctgctgcggccggggctggaaccgctgctggcgtgg
ttcaacgcccagcgtggcggcgaaggcgccggcgacgaggcgctgctgcgcctggaaagc
gatgccgaacgggtgcagatcgtcaccatccacaccagcaagggcctggagtacccactg
gtgttctgcccgttcctctgggacggcaagctgctgggcaagaatctcgacagcgcgcgc
tgccacgacgaacacggccggccgctgctggacctgggcagcgccgagctgccggacaat
ctgcagcgcgcgcgccgcgagaccttcgccgagcagctgcgcctggcctacgtggcgctg
acccgcgcgcgggatcggctgtggctgcactgggggccggtggcgctgcccaaggcgaag
aaggacggcgagctgcccgaggaaggcctgcacagcagtgccctggcttggctgctacac
ggccgcgagctggccggcgcggatgcgctcggcgaactcggtcaccatctggctgcgctg
gacggcgccggcctgcgcggcgaggtcgaacggctgacgcaggcgagcgccggcagcacc
gcctgcctgccgctggaaacccgtgaggcgagcaccgccgacagcctgcgcgccgttgcg
ccgcgacagctggcgcgccttgagcgcagcctgcacagcgcctggcgtatcggcagcttt
tccgggctggccgccggcctgcatatggaggccccggaccgcgacgcgctggtcatgccg
gacgcggccgagccgggcagcggtttcttcgccttcccgcgtggcgcgcgtgccggtacc
tgcttgcacgcgatccttgaagactgggcgcgtggccggggcgcgctggccgagcgggtc
gagccggcgctacaggccttcggcctgccgctggaatggcgcgacatcgccatcgcccag
ctgcaacaggtgctgaccaccgatctcgacggcgccggcttgacgctggccggcctgcac
gccgcccgtcgcctgccggagctgggtttcaccttcccggtgcgccagctcgacgtcacg
cgcctgcgcgcgctgctcgccgatccggccagcggcctgccggcaccgctgcgcgaggcg
gcggcgcggctggagttcgacaccctgcgcggctttctcaagggcttcatcgacctcact
ttcgagcatgacgggcgctggtacatcgccgactacaagtccaactggctcggcccggac
gccagctactacggcggcgagcggctgttgcaggcgctcgccggcgaacactactacctg
caatacctgatctacctggtggcgctgcggcgcttcctgcgccagcgcctggcggatttc
cgcgacgagcagctgggcggcgccttctacctgttcctgcgtggcatgcccgcggccggg
gtgtatttcgcccgtcccgacgatgcgttgctcgatgcgctggaccggctgttcgaggag
ggacactga
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