Stutzerimonas degradans: GOM96_11375
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Entry
GOM96_11375 CDS
T08431
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03420
Nucleotide excision repair
sdeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GOM96_11375 (uvrD)
03430 Mismatch repair
GOM96_11375 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_11375 (uvrD)
Enzymes [BR:
sdeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GOM96_11375 (uvrD)
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GOM96_11375 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
GOM96_11375 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
AAA_22
DUF3553
Motif
Other DBs
NCBI-ProteinID:
QGW21560
LinkDB
All DBs
Position
complement(2446656..2448845)
Genome browser
AA seq
729 aa
AA seq
DB search
MHDDLSLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSIL
SVTFTNKAAAEMRQRIEQLLHVNPQGLWVGTFHGLAHRLLRAHWQEAKLDQNFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWWINAQKDEGLRPQNIQAGGDLFLATQLKIYEAYE
QACVRAGVIDFSELLLRALDLWRNHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAR
GGGSLMVVGDDDQSIYGWRGARIENLQQFSQDFPDAETIRLEQNYRSTACILKAANALIA
NNQGRLGKELWTEGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGLSRSEIAILYRSNA
QSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRHNDAALERVINLPARGI
GEKTVETLRQLARQEEISLWAALHQAVGTKLVSGRAASALNGFVELIDTLALKVEGMQLH
SMAQLVIEQSGLLAYHRDEKGEKAQARVENLEELVSAARAFDNYSEEDDDVQSPLAAFLD
HASLEAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEER
RLAYVGITRAMQQLVITYAETRRLYGSETYNKVSRFVREIPPALIQEVRLSNTVTRSFSG
KNMGGGSLFDGAGVPDTPFNLGQRVRHALFGEGTILNFEGSGAQARVQVNFEDEGSKWLM
LSYAKLEAL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgatctctctctcctcctgaattccctcaacgatgcccagcgccaggccgtg
gccgcgccgctggggcgtcaattggtgttggccggcgccggctcgggcaagacccgcgtg
ctggtgcaccgcatcgcctggctgcaccaggtcgaacgcgcctcgctgcactcgatcctc
tcggtgaccttcaccaacaaggccgccgcggagatgcgtcagcgcatcgagcagctgctg
catgtgaacccgcagggcctgtgggttggcaccttccacggcctcgcgcaccgcctgctg
cgcgcccactggcaggaagcgaaactggaccagaatttccagattctcgattccgacgac
cagcaacggctggtcaagcgggtaatccgcgagctcggcctcgacgagcagcgctggccg
gcgcgccaggcgcagtggtggatcaatgcgcagaaggacgagggcctgcgcccgcagaac
atccaggccggcggcgacctgttcctcgccacccagttgaagatctacgaggcctacgag
caggcctgcgtccgcgccggggtgatcgacttctccgagctgctgctgcgtgccctcgac
ctgtggcgcaatcatccgggcctgctggagcactaccagcggcgtttccgccacgtgctg
gtggacgaattccaagacaccaacgccgtgcagtacgcctggctgcgcctcttggcccgc
ggcggcgggagcctgatggtggtgggcgacgatgaccagtcgatctacggctggcgcggc
gcgcggatcgagaatctgcagcagttcagtcaggatttccccgacgccgagaccatccgt
ctggagcagaactaccgctccaccgcctgcatcctcaaggccgccaacgcactgatcgcc
aacaaccagggccgcctgggcaaagagctgtggaccgagggctgcgaaggcgagccgatc
agcctgtacgccgccttcaacgagcacgacgaagcgcgctacgtggtcgagagcatcgag
aaggccatccgcgacggtctgagtcgcagcgaaattgccatcctctaccgttccaacgca
cagtcacgggtgctggaagaggcgctgctgcgcgagaagattccctaccgcatctacggc
ggccagcgcttcttcgagcgcgccgagatcaagaacgccatggcctacctgcgcctgatc
cagacccgtcacaacgacgcggcgctggaacgggtgatcaacctgccggcgcgcggcatc
ggcgagaagaccgtcgagaccctgcgccaactggcgcgccaggaggagatctcgctgtgg
gcggcgctgcaccaggcggtcggcaccaagctcgtctccggccgcgccgccagcgcgctg
aacggcttcgtcgaactgatcgacaccctcgcgctgaaggtcgagggcatgcagctgcac
agcatggcgcagctggtcatcgaacagtccggtctgctcgcctaccaccgcgacgaaaag
ggcgagaaggcccaggcgcgggtggagaacctcgaggaactggtgtccgccgcgcgcgcc
ttcgacaactacagcgaagaggacgacgacgtccagtcaccgctggcagcctttctcgac
cacgcctcgctggaggccggcgagcagcaggccggcgaccacgaggacagcgtgcagctg
atgacgctgcacagcgccaagggtctggagtttccattggtgttcctggtcggcatggaa
gaaggcctgttcccgcacaagatgagcctggaggagtccggccgcctggaagaggaacgc
cgcctggcctacgtcggcatcacccgcgccatgcagcagctggtgatcacctacgccgaa
acgcgccggctgtacggcagcgagacctacaacaaggtctcgcgcttcgtccgcgagatc
ccgccggcgctgattcaggaagtgcggctgagcaacacggtgacgcgctcgttcagcggc
aagaacatgggcggcggctcgctgttcgacggtgccggcgtgccggacaccccgttcaac
ctcggccagcgcgtgcgccatgcgctgttcggcgagggcaccatcctcaacttcgaaggc
tccggcgcccaggcacgggtgcaggtgaatttcgaggatgaaggcagcaagtggctgatg
ctcagctacgccaagctcgaagcgctctga
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