Stutzerimonas degradans: GOM96_12025
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Entry
GOM96_12025 CDS
T08431
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GOM96_12025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeg03019
]
GOM96_12025
Enzymes [BR:
sdeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GOM96_12025
Messenger RNA biogenesis [BR:
sdeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GOM96_12025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QGW21680
LinkDB
All DBs
Position
complement(2602822..2604639)
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AA seq
605 aa
AA seq
DB search
MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ELLFPGGHPDREHRHGAKQPRVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMN
PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAGKLLHDPERIEVTPPNTTVERIEQRVFHIAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKGIERLTKQRIPDGDLMGFDASTIEAEKPEVREPRPPRPQRGERKARGERDKPADKGAE
QKERNRRSQSKARKPARDGAASEAQAPARPPQLPPNRAPDEFLDDEVDNFGNRVDYVSPY
QNKQNRGRRPGAPAQPGSAPRAAGAARSGAPGAPSGKGKRPGAGQGQTARSGQPRNGQQR
RKNEGRRIEEPVVVRQEAAKPREKQPVIIHKESKIDRLPSLDQLEQLPTRPRGEKPALLT
RNREA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagccggtgccgtcgaggccgccggt
tatacccagcctactcccgtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcccagaccggtaccggcaagaccggcggcttcgccctgccggtactc
gaactactgttccccggcggccacccggaccgcgagcatcgccacggcgcgaaacagccg
cgcgtgctggtgctgacgccgacccgcgaactcgccgcccaggtccatgacagcttcaag
gtctacgcccgcgatctgccgctgaaaagcgcagtgatattcggtggcgtcggcatgaac
ccgcagatccaggccgtggccaagggtctcgacgtgctggtcgcctgccccggccgcctg
ctcgatctggccaaccagaaggccatcgatctgtcgcacgtggaaatcctcgtgctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtgctggccaag
ctgccggccaagcgccagaacctgctgttctcggccaccttctccaaggacatcaccgat
ctggccggcaagctgctgcacgaccccgagcgcatcgaggtcacgccgccgaacaccacc
gtcgagcgcatcgagcagcgggtgttccacattgccgccagccacaagcgtgccctgctc
gcgcacctgatcacccagggagcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcttggccgagtacctagaaaagcacggtctgccagccgccgcgatccac
ggcaacaagagccagaacgcccgtaccaaggcgctggccgatttcaaggccaaccaggtg
cgcatcctggtggcgaccgacatcgccgcccgtggtctggacatcgaccagctgccgcac
gtggtcaatttcgagctgcccaacgtcgaggaagactacgtgcaccgcatcggccgcacc
ggtcgcgccggacgcagcggcgaggccatctcgctggtcgcgccggacgaggaaaagctg
ctcaagggcatcgaacgcctgaccaagcagcgcattcccgacggcgatctgatgggcttc
gatgccagcaccatcgaggcggagaagccggaggtgcgcgaaccgcgcccgccgcgtccg
cagcgtggcgaacgcaaggcacgcggtgaacgcgacaagccggcagacaaaggcgccgag
cagaaggaacgcaatcgtcgtagtcagagcaaggcgcgcaagcctgctcgcgatggcgcc
gccagcgaagcgcaagcccctgctcgcccgccacagctaccgccgaaccgtgctccggac
gaatttctcgatgacgaagtggacaacttcggcaatcgtgtcgattacgtcagcccctac
cagaacaaacagaaccgcggccgccgtcccggcgccccggctcagcctggtagcgcgcca
cgtgccgccggtgccgcacgttcgggcgcgcctggcgctccctccggcaagggcaagcgc
ccgggtgcgggtcaaggccagacggcgcgcagcggtcagccgcgcaacggccagcaacgg
cgcaagaacgagggccgccggattgaagagccggttgtcgtgcgtcaggaagccgccaag
ccgcgtgaaaagcagccggtgatcatccacaaggaatcgaagatcgatcgcctgcccagc
ctggatcagctcgagcagctgccaacccggccacgaggcgagaagccggccctgctgacg
cgcaaccgcgaagcctga
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