Stutzerimonas degradans: GOM96_13140
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Entry
GOM96_13140 CDS
T08431
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GOM96_13140 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdeg03021
]
GOM96_13140 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_13140 (rpoC)
Enzymes [BR:
sdeg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GOM96_13140 (rpoC)
Transcription machinery [BR:
sdeg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GOM96_13140 (rpoC)
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GOM96_13140 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
DUF3150
PPDFL
Motif
Other DBs
NCBI-ProteinID:
QGW21887
LinkDB
All DBs
Position
2840557..2844756
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLNQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFHGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARIKVRIHETVKERDGSVANNVRIVDTTVGRALLFQIVPAGLSFDVVNQPMKKKA
ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSREKVIDREGKEVEQDSFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLHMTPHIEGGDVVEPLGERVL
GRVIARDVLKPGTEEVLVPAGTLIDEQWVDFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVLVKNGGTIRL
HNLKYVERTDGALVAVSRSGELAVADDFGRERERYKLPYGAVISIKEGDKVDAGSVVAKW
DPHTHPIVTEMKGIVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKL
VDANGKDLLLPGTDVPAQYFLPANALVGVADGAEVSVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSFIKGDQMELTQVLEENERLSEEDKFVAKYVRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSADEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctgttgaaaaaccagggtcaaatcgaagagttcgatgccatc
aagattgccctggcttcgcccgagatgatccgttcctggtccttcggtgaagtgaagaag
ccggagaccattaactaccgcaccttcaagccggagcgcgatggcctgttctgcgccaag
atcttcgggccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgtggtgtaatctgcgagaagtgcggcgtggaagtcgcgctggccaaggtgcgccgcgag
cgcatggcgcacatcgagctggcttcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgtgatatcgagcgcgtgctctat
ttcgagagctacgtcgtcatcgatccgggcatgaccacgctggaaaagggccagctgctg
aacgatgagcagtacttcgaggcgctggaagagttcggcgatgatttcgatgcccgcatg
ggtgccgaggccgtgcgcgaactgctcaaccagatcgacctggaacacgaaattggtcgc
ctgcgcgaagagatcccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctcaaactgatggaagctttccatggctcgggcaacctgcctgagtggatggtgctgacc
gtgctgccggtactgccgccggacctgcgtccgctggttccgctggatggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgtgtcatcaaccgtaacaaccgtctcaag
cgcctgctcgatctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgcgctgctggacaacggccgtcgcggtcgggccatcaccggttccaac
aagcgcccgctcaagtccctggccgacatgatcaagggcaaacaggggcgtttccgtcag
aacctgctgggcaagcgcgtggactactccggtcgttcggtgatcaccgtcggcccgacc
ctgcgtctgcatcagtgcggtctgccgaagaagatggcgctggagctgttcaagccgttc
attttcggcaagctggaaatgcgcggcatggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagcttcccgaggtttgggacgtgctcgccgaagtcatccgcgaacatccc
gtgctgctcaaccgtgcgccgacgctgcaccgtctgggtatccaagcgttcgagccggtg
ctaatcgaaggcaaggcgatccagctgcacccgctggtttgtgcggcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagctcagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctttcgccggccaacggtgaaccgatcatc
gtgccgtcgcaggacgtggttctgggtctgtactacatgacccgcgaagccatcaatgcc
aagggcgaaggtcgcgtgttcgctgacctgcaggaagtcgaccgcgtattccgtgccggt
gaagcctcgctgcacgcgcggatcaaggtgcgtatccacgagaccgtcaaggagcgcgat
ggtagcgttgccaacaatgtacgcattgtcgataccaccgtggggcgtgcactgctgttc
cagatcgtgccggccggcctgtcgttcgacgtggtcaaccagccgatgaagaagaaggcg
atctcgaagctgatcaacctgtgctatcgcacggtggggctgaaggacaccgttatcttc
gccgaccagctgatgtacaccggtttcgcctactcgacgatttccggcgtttccatcggc
gtgaacgacttcgtcatcccggacgagaaggcgcgcatcatcgacgccgctaccgaggaa
gtgaaggagatcgagagccagtacgcttccggcctggtcacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggctaacgacgaagtgtccaaggcgatgatggccaac
ctctcgcgcgagaaggtcatcgaccgcgagggcaaggaagtcgagcaggattccttcaat
tcgatgtacatgatggccgactccggtgcgcggggctccgcggcacagattcgccagctc
gccggtatgcgcggcctgatggccaagccggacggttccatcatcgagacgccgatcact
gcgaacttccgtgaaggtttgaacgtactgcagtacttcatctcgacccacggtgcgcgc
aagggtctggcggatactgcgctgaagactgcgaactccggttacctgacccgtcgtctg
gtcgacgtcgcgcaggatctggtggtgaccgagatcgactgcggcaccgagcaaggcctg
cacatgacgccgcacatcgagggtggtgacgtagtcgagccgctgggcgagcgtgtgctc
ggtcgggtgattgcgcgtgacgtgctcaaaccgggtactgaagaggttctggtaccggcc
ggtaccctgatcgacgagcagtgggtcgatttcatcgaactgaacagcatcgacgaagtg
atcgtgcgctcgccgatcagttgcgagacgcgttatggcatctgcgccaagtgctatggt
cgcgatctggcccgcgggcatcaggtcaacatcggtgaggcagtaggggttatcgctgcg
cagtccatcggtgagccgggtactcagctgaccatgcgtacgttccacatcggtggtgcg
gcgagccggacttctgccgtcgacaacgtgctggtgaagaacggcggtaccatccgcctg
cacaacctgaagtacgtcgagcgtaccgacggtgcgctggtggcggtttcccgctccggc
gaactggcagtggccgacgacttcggtcgcgagcgcgagcgctataagctgccgtacggc
gcggttatctccattaaggaaggtgacaaggtcgatgcgggctcggtagtcgctaagtgg
gatccgcacacccacccgatcgtgaccgaaatgaagggtatcgtgaccttcgtcggcatg
gaggagaacatcaccatcaagcgtcagaccgacgaactcaccggtctgaccaacattgag
gtgatggatcccaaggaccgtccggccgctggtaaggatatccgtccggcagtcaagctg
gtcgacgcgaatggcaaggatctgctgctgccgggtaccgacgttcccgcgcagtatttc
ctgccggccaacgccttggtcggtgtggccgacggcgcggaagtgagtgtgggcgacgtc
attgcacgtatcccgcaggagacttccaagacccgtgacatcaccggtggtctgccgcgt
gtggctgacctgtttgaggcgcgtcgtccgaaggagccttcgatcctggcggaaatcagc
ggcaccatcagctttggcaaagagaccaagggcaagcgccgtctggtcatcacgccgacc
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctcaacgtcttcgaa
ggcgagcaggtgaacaagggggaagtgatctccgacggtccgagcaacccgcacgatatc
ctgcgtctgctgggcgtcagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgcctgcagggcgttaagatcaacgacaagcacatcgagaccatcctgcggcagatg
ctgcgcaaggtcgagatcaccgagtccggcgattccagctttatcaagggtgaccagatg
gagctgactcaggtgctggaagagaacgagcgtttgagtgaagaggacaagttcgtcgcc
aagtacgtgcgcgtcctgctgggtatcaccaaggcctcgttgtcgaccgaatcgttcatc
tccgcggcctccttccaggagactacgcgggtgctgaccgaggcggccgtcactggcaag
cgcgattatctgcgcggtctgaaggaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtttggcctatcacagcgagcgcaagcgcaagcgtgatgccgacaagccggtccga
gtgagtgccgatgaggtcgaagcggcgttgaccgaggcgctgaactccagcggcaactga
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integrated database retrieval system
