Stutzerimonas degradans: GOM96_13310
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Entry
GOM96_13310 CDS
T08431
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GOM96_13310 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeg03400
]
GOM96_13310 (uvrA)
DNA repair and recombination proteins [BR:
sdeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GOM96_13310 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GOM96_13310 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
nSTAND1
AAA_16
AAA_23
BCA_ABC_TP_C
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND3
Viral_helicase1
cobW
DUF4350
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QGW21920
LinkDB
All DBs
Position
complement(2864712..2867555)
Genome browser
AA seq
947 aa
AA seq
DB search
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC
PDHDTPLEAQTVSQMVDQVLAQPEGRKLMLLAPVIRERKGEHLAVFDELRAQGFVRARVN
GRLYELDELPKLDKQKKHTIEVVVDRFKVRADLQQRLAESFETALKLADGIALIASMEED
GAEDLIFSARFACPICGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDAKRLVNGELT
LAEGAIRGWDRRNVYYFQMLGSLAAHYGFSLDEPFAALPADQQKVILYGSGRQNVEFRYL
NDRGDIVTRSHPFEGIIPNLERRYRETESNSVREELAKYLSTQHCPECLGTRLRREARHV
WVGDKTLPAVTALPIGDAADYFGVLSLPGRRGEIADKILKEIRERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLRHLRDIGNTV
IVVEHDEDAIRLADYVVDIGPGAGVHGGRIVAEGTPDEVMAHPDSLTGKYLSGRVQIEYP
PQRTPRDPKKLLKLKGARGNNLRNVDLEIPVGLLTCITGVSGSGKSTLINNTLFPITATA
LNGATTLEVAPHDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPEA
RSRGYGPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDIYVPCDVCKGKRYNRETLEVKYK
GKSITEVLDMTIEEARGFFDPVPAVARKLQTLIDVGLSYIKLGQSATTLSGGEAQRVKLS
RELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWL
VDLGPEGGSKGGQIIASGTPEDVAATAQSHTGHFLKPLLERDRARTR
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
ttggacaagattctgattcgtggggcccgcacccacaacctgaagaacatcgacctcaca
ttgccgcgcgacaagctgatcgtgatcaccggcttgtccggctccggcaaatcctcattg
gccttcgatacgctctatgccgaaggccagcgccgctacgtcgagtcgctctcggcctat
gcccggcagttcctgtcgatgatggagaagcccgacgtcgacactatcgaaggcctgtcg
ccggcgatctccatcgagcagaagtccacgtcgcacaacccgcgctcgactgtcggcacc
atcaccgaaatctacgactacctgcgcctgctgtacgcacgggtcggtacgccgcggtgt
cccgatcatgacaccccgctggaggcgcagaccgtcagccagatggtcgatcaggtgctg
gcacagcccgaagggcgcaagctgatgctgctggctccggtgatccgcgagcgcaagggc
gagcacctggcagtgttcgacgaactgcgcgctcagggcttcgtgcgcgctcgggtcaac
gggcggctgtacgaactggatgagttgccgaagctggacaagcagaagaagcacaccatc
gaggtggtagtcgaccgcttcaaggtacgcgccgatctgcaacagcgcctcgccgaatcc
ttcgagacggccctgaagctggccgacggcatcgcgctgatcgcctcgatggaagaagac
ggcgccgaggatctgatcttttccgcgcgcttcgcctgcccgatctgcggtcactcgatc
agcgaactcgagcccaagctgttctccttcaacaatccggccggcgcctgcccgacctgc
gacggcctgggtgttaaacagttcttcgatgccaagcggctggtcaacggcgagctaacc
ctggccgaaggcgccatccgcggctgggaccgccgcaacgtttactacttccagatgctc
ggttcgctggccgcccactacggtttcagcctcgacgagcccttcgccgccctgccggcc
gaccagcagaaggtgattctgtacggcagcggcaggcagaacgtcgaattccgctacctc
aatgatcgcggcgacatcgtcacgcgctcgcacccgttcgagggcatcatccccaacctt
gagcggcgctaccgcgagaccgaatccaactccgtgcgcgaggagctggccaagtacctg
agcacccagcactgccccgagtgcctgggcacccgcctgcgtcgcgaggcccgccatgtg
tgggtcggcgacaagaccctgccggcagtcaccgcgctgccgatcggcgacgccgccgac
tacttcggcgtcctttcgctgcccggccggcgcggcgagatcgccgacaagatcctcaag
gagattcgcgagcgcctgcagttcctggtcaacgtcggcctcgactacctgaccctggac
cgcagcgccgacaccctgtccggcggtgaggcccagcgcatccgcctggccagccagatc
ggcgcaggcctggtcggggtgatgtacatcctggacgagccgtcgatcggcctgcaccag
cgcgacaacgaacgcctgctcggcaccctgcgccacctgcgcgacatcggcaacacagtg
atcgtagtggagcacgacgaggatgccatccgcctcgccgactatgtggtggacatcggc
cccggcgctggcgtgcatggcgggcgcatcgtcgccgaaggcacaccggacgaggtcatg
gcgcatcccgattcgctgaccggcaaatacctatccggcagagtgcagatcgagtacccg
ccgcagcgcaccccgcgcgatccgaagaaactgctcaagctcaagggcgcgcgcggcaac
aacctgcgcaacgtcgatctggagatcccggtgggcctgctcacctgcatcaccggcgta
tccggctcgggcaagtcgacgctgatcaacaacacgctgtttccgattactgccactgcg
ctcaacggggcgacgacactggaggtcgcaccgcatgactcgtttgacggcctgcagcat
ctggacaaggtagtcgacatcgaccagagcccgatcggccgcaccccgcgctccaaccca
gccacctacaccggactgttcacgccgattcgcgagttgttcgccggcgtgccggaagcg
cgctcgcgcggctacgggccggggcgcttctccttcaacgtcaaaggcgggcgctgcgaa
gcctgccagggcgacggcgtgctcaaggtggagatgcactttctgccggacatctacgtg
ccctgcgacgtctgcaagggcaaacgctacaaccgcgaaaccctggaggtgaagtacaag
ggcaagagcatcaccgaggtgctcgacatgaccatcgaggaggcgcggggattcttcgac
ccggtgccggcggtcgcgcgcaagctgcagacgctgatcgatgtcggcctgtcgtacatc
aagctgggccagagcgcgaccacgctgtccggcggcgaggcacagcgggtcaagctgtca
cgcgagctgtccaagcgcgataccggcaagaccctctacattctcgacgagccaactacc
ggcctgcatttcgccgacatccagcaactgctcgatgtgctgcaccgtctgcgcgatcat
ggcaataccgtggtcgtgatcgagcacaacctggacgtgatcaagacggcggactggctg
gtcgacctcggccccgaaggcggttccaagggggggcagatcatcgccagcggcacaccg
gaggatgtcgcggcgacggcgcagtcgcataccggacacttcctcaaaccgctgctggag
cgcgatcgggcacgcacccgataa
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