Stutzerimonas degradans: GOM96_14515
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Entry
GOM96_14515 CDS
T08431
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg02020
Two-component system
sdeg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GOM96_14515
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GOM96_14515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdeg03021
]
GOM96_14515
Transcription machinery [BR:
sdeg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GOM96_14515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Acyl-CoA_dh_C
DUF4741
HTH_IclR
RRP4_S1
Motif
Other DBs
NCBI-ProteinID:
QGW22151
LinkDB
All DBs
Position
complement(3108292..3109797)
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AA seq
501 aa
AA seq
DB search
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEREEDGDDFSHAD
PMAEAADQNGEGSSASQTSSDNRYEEPAHNADHLEEGDWGERIPSELPVDTAWEDIYQTS
ASSLPSSDDDDWDFTTRTSSGVSLQSHLLWQLNLAPMSDTDRLIATTLIDCINDQGYLEE
SLEEVLESLDPELEVELDEIEVVLHRIQQFEPAGIGARNLSECLLLQLRQLPEQTAWLEQ
AKQLVSDYLDVLGNRDYSLLMRRMKLKEDELRQVIELVQSLNPRPGSQIEASEPEYVVPD
VIVRKHNDRWLVELNQDAMPRLRVNAQYAGFVKRADSSADNTFMRNQLQEARWFIKSLLS
RNETLMKVATQIVEHQRGFLEHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRG
IYELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENPKKPLSDSKIAGLLEAQGIQVAR
RTIAKYRESLGIAPSSERKRL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcctgaagatgggccagcagctgacgatgacgccgcagctgcaa
caagccatacgactgctgcagctttctacgctggatctgcagcaggaaatccaggaagcc
ctggattccaacccgatgctcgagcgcgaggaggacggcgatgacttcagccacgccgat
cccatggccgaagccgccgaccagaacggcgaaggctcctctgccagccagacaagcagc
gacaatcgttacgaagaacccgcacataacgccgaccacctagaagaaggcgactggggc
gagcgcattcctagcgaactgcccgtcgacacggcctgggaagacatctaccagaccagc
gccagcagcctgccgagcagtgacgatgacgattgggatttcaccacccgcacctcaagc
ggcgtcagcctgcaaagccacctgctctggcaactcaacctggcgccaatgagcgatacc
gaccgcctgatcgccacgaccctcatcgactgcatcaatgaccaaggctatctggaagaa
agcctggaagaggtgctcgagtcactggaccccgagctcgaggtcgaactcgacgagatt
gaagtggtgctccaccgtatccagcagttcgaaccggccggcatcggcgcccgcaacctg
agcgaatgcctgctgctgcaactgcgccagctgcccgaacagaccgcctggctggaacag
gccaagcaactggtaagcgattacctggatgtcctgggtaatcgcgactacagcctgctg
atgcgcaggatgaagctcaaggaagatgagctacgccaggtgatcgagctggtacagagc
ctcaacccgcgccccggctcgcaaatcgaggccagcgagccagaatatgtggtgccagat
gtgattgtgcgcaagcacaacgatcgctggctggtggagttgaaccaggacgccatgccg
cgcctgcgggtcaacgcgcaatacgccggcttcgtcaagcgcgccgactccagcgccgac
aacaccttcatgcgcaaccagctgcaggaagcgcgctggttcatcaagagcctgctcagc
cgcaacgagacgctaatgaaggtcgccacgcagatcgtcgagcatcagcgtggctttctc
gaacacggcgacgaagcgatgaagccccttgtgctacacgacatcgccgaggcggtaggc
atgcacgaatcgaccatctcgcgcgtgaccacgcagaaatacatgcacacgccgcggggt
atttacgagctgaaatacttcttctccagccacgtcagcacggccgaaggcggcgagtgc
tcctccaccgctatccgcgcgatcatcaagaagttggtcgctgcggaaaaccccaaaaag
ccattgagcgacagtaagatcgctggtttactggaggcacagggcatccaggttgcccgt
cgtaccatcgccaaataccgtgaatcgcttggtatcgctccctcaagcgagcgcaagcgg
ctatag
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integrated database retrieval system
