Stutzerimonas degradans: GOM96_15205
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Entry
GOM96_15205 CDS
T08431
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sdeg
Stutzerimonas degradans
Pathway
sdeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GOM96_15205 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeg03019
]
GOM96_15205 (rhlB)
Enzymes [BR:
sdeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GOM96_15205 (rhlB)
Messenger RNA biogenesis [BR:
sdeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GOM96_15205 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QGW22286
LinkDB
All DBs
Position
complement(3240213..3241634)
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AA seq
473 aa
AA seq
DB search
MNEKAVLKALKKIFAKDEPQPAPITPAASSSAADTAQTQHTQPAQPDTKKAERAADKPRR
PRHNKPAAPAWKLEDFVVEPVEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTL
KGQDAIGRAQTGTGKTAAFLISTITQLLQTPPPKERYMGEPRALIIAPTRELVVQIANDA
LDLAKYTGLNVMSFVGGMDFDKQLKQLESRFCDILVATPGRLLDFNQRGEVHLDMVEVMV
LDEADRMLDMGFIPQVRQIIRQTPMKGERQTLLFSATFTEDVMNLARQWTVNPAIVEIEP
ENVASDTVEQHVYAVAGSDKYKLLYNLISQNDWTRVMVFANRKDEVRRIEERLTKDGISA
AQMSGDVPQHKRIKVLEGFREGKIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHR
IGRTGRAGASGTSISFAGEDDAFALPPIEELIGRKIHCEMPPAELLVPVPRSR
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagaaggccgtgctcaaagcactcaagaaaatctttgccaaggacgagccccag
ccggcgcccataacgcccgccgccagcagctccgccgccgacactgcccagacgcagcac
acccagcccgcgcagccggacaccaagaaagccgagcgcgccgccgacaagccacgtcgc
ccgcgccacaacaaaccggccgctccggcctggaagctcgaagacttcgtagtcgagccg
gtcgaaggcaagacccgcttccatgacttcaagctcgcccccgagctgatgcacgccatc
caggatctgggcttcccgtactgcacgccgatccaggcgcaggtgctgggcttcacgctc
aagggtcaggacgccatcggccgcgcgcagaccggcactggcaagaccgcggccttcctg
atttccaccatcacccagctgctgcagacgccgccgcccaaggaacgctacatgggcgaa
ccacgcgcgctgatcatcgcgccgacccgcgagctggtggtgcagatcgccaacgacgcg
ctggacctggccaagtacaccggcctgaacgtgatgagcttcgtcggcggcatggacttc
gacaagcagctcaagcagctcgaatcgcgcttctgcgacatcctggtcgccacgcccggc
cgcctgctggacttcaaccagcgcggcgaggtgcatctggacatggtcgaggtgatggtg
ctggacgaggctgatcgcatgctcgacatgggcttcatcccgcaggtgcgccagatcatc
cggcaaacgccgatgaagggtgaacgccagaccttgctgttctccgcgaccttcacggag
gatgtgatgaacctcgcccgccagtggacggtgaacccggccatcgtcgagatcgagccg
gaaaacgtcgccagcgacaccgtcgaacagcacgtctacgcggtggccggcagcgacaag
tacaagctgctctacaacctgatcagccagaacgactggacccgagtgatggtcttcgcc
aatcgcaaggacgaagtccggcgcatcgaagaacgcctgaccaaggacggcatcagcgcc
gcgcagatgtccggtgacgtgccgcagcacaaacgcatcaaggttctggaaggcttccgt
gagggcaagatccgcgtcctggtggccaccgacgtcgccggtcgcggcattcacgtcgac
ggcatcagccacgtgatcaacttcaccctgccggaagatccggacgactacgtgcaccgc
atcggtcgtaccggccgtgccggcgccagcggcacttcgatcagtttcgccggcgaggat
gacgccttcgccctgccgccgatcgaggagctgatcgggcgcaagattcactgcgagatg
ccgccggccgagctgctggtgccggtaccacgcagccgttga
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