Stutzerimonas degradans: GOM96_17135
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Entry
GOM96_17135 CDS
T08431
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sdeg
Stutzerimonas degradans
Brite
KEGG Orthology (KO) [BR:
sdeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdeg03009
]
GOM96_17135
Enzymes [BR:
sdeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GOM96_17135
Ribosome biogenesis [BR:
sdeg03009
]
Prokaryotic type
rRNA helicases
GOM96_17135
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QGW22654
LinkDB
All DBs
Position
3644483..3645817
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AA seq
444 aa
AA seq
DB search
MFDQFALHERLLKAVAELKFVEPTAVQVAAIPPALEGKDLRVTAQTGSGKTAAFVLPMLN
RLIGDAQPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDVLIGTPGRMIEHLNAGTLILKDVEILILDEADRMLDMGFAEDVQRLVGECAKRQQTL
LFSATSGGASLREMAAQVLREPLHLQLNRVSELNEGTRQQIITADDIAHKEKLVHWLLAN
ETYQKAVVFTNTRAQADRLYGHLVAAGTKVFVLHGEKDQKERKLAIERLKQGGVKVLVAT
DVAARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLICHNDWNLMSSIER
YLKQRFERRVIKGLKGTYQGPKNLKASGKAAGSKKKKLEKKKGSADKKAKPAAKRPKNSP
RPAPSPVVSQDGLAPLKRKKPAAE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgaccaattcgccctgcacgaacgcctgctcaaggcagtcgccgaactcaaattc
gtcgagccgaccgccgtgcaggtcgccgccatccccccggcgctggagggcaaggacctg
cgcgtgacggcgcagaccggcagtggcaagaccgctgccttcgtactgccgatgctcaac
cggctgatcggcgatgcacagccgcgcgtcgatgtgcgggcgctgatcctgctgccgacg
cgtgaactggcgcagcagacgctcaaggaagtcgagcgcttctcgcagttcaccttcatc
aagtccgggctgatcaccggcggcgaggatttcaaggtgcaggccgccatgctgcgcaag
gtgccggacgtgctgatcggtacgcccggacggatgatcgagcacctgaatgccggcacg
ctgatcctcaaggacgtggaaatcctcatcctcgacgaagccgatcgcatgctggacatg
ggcttcgccgaagacgtgcagcgattggtcggcgagtgcgccaagcgccagcagaccctg
ctgttctccgccaccagcggcggtgcgagcctgcgcgagatggccgcgcaagtactgcgc
gagccgctgcacctgcagctcaaccgtgtcagcgagctgaacgagggcacgcgtcagcag
atcatcaccgccgacgacattgcgcataaagaaaagctggtgcattggctactggccaac
gagacctaccagaaggccgtggtgttcaccaacacccgcgcccaggccgaccgcctttac
gggcatctggttgctgccggcaccaaggtcttcgtgctgcacggggagaaggaccagaag
gagcgcaagctcgccatcgagcgcctcaagcagggcggcgtcaaggtgctggtcgccacc
gatgtggcggcgcgcgggctggatatcgaaggcatggatctggtcatcaacttcgacatg
ccgcgctccggcgacgagtacgtccaccgcatcggccgtaccgggcgggccggcggcgaa
ggtctggccatctcgctgatctgccacaacgactggaacctgatgtccagcatcgagcgc
tacctcaagcagcgtttcgagcgccgggtgatcaaggggctcaaaggcacctatcaaggg
ccgaagaacctcaaggcctcgggcaaggccgccggcagcaagaaaaagaagctcgagaag
aagaaaggcagcgccgacaaaaaggccaagccggccgccaagcggccgaagaactcgccg
cgtccggcgccgtcgccggtggtcagccaggacgggctggcgccgctcaagcgcaagaag
ccggctgcggagtga
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