Streptococcus dentalis: SM121_07650
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Entry
SM121_07650 CDS
T10629
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sden Streptococcus dentalis
Brite
KEGG Orthology (KO) [BR:
sden00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sden03009
]
SM121_07650 (rlmD)
Enzymes [BR:
sden01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SM121_07650 (rlmD)
Ribosome biogenesis [BR:
sden03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SM121_07650 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
Cons_hypoth95
Methyltransf_31
N6_N4_Mtase
MTS
RrnaAD
Methyltransf_25
PrmA
TRM
DOT1
PCMT
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
WPS54857
LinkDB
All DBs
Position
complement(1558552..1559907)
Genome browser
AA seq
451 aa
AA seq
DB search
MLKKNEIVTVEIVDLTHEGAGVAKVDGLVFFVENALPGEVIRMRVLKVNKKIGYGKVEEY
LEKSPHRNEELDLAYLRSGIADLGHLAYPEQLKFKAKQVKDSLYKMAGISDIEVPLTLGM
DHPVKYRNKAQVPVRRVNGQVETGFFRKNSHDLMPIEDFYIQNPVIDQVVLALRDLIRRF
DLKPYDEKEQSGLIRNLVVRRGHHSGEIMVILVTTRPKVFRVDQLIEQLIKQFPAIKSVM
QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFA
ELRAEDIVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNARLNGISNAHYVCDT
AENAMKNWLKEGIQPTAILVDPPRKGLTESFIRASAQTGADRIAYISCNVATMARDIKLY
QELGYELKKVQPVDLFPQTHHVEAVSLLVKE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagaaaaatgaaattgtaacggttgagattgtcgatttgacccacgaaggagca
ggagtggctaaggtcgatggcctggtcttttttgtggagaatgccctgccaggagaagtc
attcgcatgcgcgtgctcaaggtcaataagaagatcggctacggaaaagtagaggagtac
ttggaaaaatcccctcaccgcaatgaagaactagacctggcttacttgcgaagcggtatt
gccgacttgggccacctagcttatccggagcagctgaaattcaaggccaaacaggtcaag
gatagcctctacaagatggcaggaatttccgatatcgaagtgcccctgaccttggggatg
gaccatcccgtcaagtatcgcaacaaggcccaggtccctgtccgtcgcgtcaatggtcag
gtagagacaggcttctttcggaaaaactctcatgatctaatgccgattgaagatttctat
atccaaaatccagtcattgaccaagtggtcttggcgcttcgggacttgattcgtcgattt
gacctcaagccttatgatgaaaaagaacaatctggcttgattcgcaatctcgtcgtccgc
cgaggtcaccattcaggagaaatcatggtcattttggtcactactcgtcccaaggttttc
cgtgtcgaccagttgatcgagcagttgatcaagcaatttccagccatcaaatccgttatg
caaaatatcaatgaccagaataccaatgccatttttggaaaagaatggcggacgctttat
ggtcaagactatattaccgatcaaatgttgggcaatagcttccaaatatctggtccagcc
ttttaccaagtcaataccgaaatggcagagaagctttatcagacagctattgactttgcg
gagttgagagcagaggatatcgtgattgacgcttactccggaattgggaccattggcttg
tcagttgccaagcatgtcaaagaagtctatggagttgaggtcatccctgaagcagtggag
aatagccagaagaatgctagattaaacggcatcagcaatgcccactatgtctgtgacaca
gctgaaaatgcaatgaagaattggctcaaggaaggcatccaaccaactgctatcctagtt
gacccaccacgcaagggcttgaccgaaagctttatcagagcaagtgcccaaacaggggct
gaccgcatcgcctatatctcctgtaacgtcgccaccatggcgcgtgatatcaaactctat
caagagttaggttatgaattgaagaaagtccagccggttgatctgttcccacaaacgcac
catgttgaggcggtaagtttgctagtcaaggagtaa
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