Shewanella decolorationis: D0436_01295
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Entry
D0436_01295 CDS
T09167
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D0436_01295 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdeo03021
]
D0436_01295 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdeo03400
]
D0436_01295 (rpoC)
Enzymes [BR:
sdeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D0436_01295 (rpoC)
Transcription machinery [BR:
sdeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D0436_01295 (rpoC)
DNA repair and recombination proteins [BR:
sdeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D0436_01295 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QDZ89199
UniProt:
A0A5B8QSZ1
LinkDB
All DBs
Position
complement(4734163..4738380)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG
AAELHARVKVRITETVIGDNGERTEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVLYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHLINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEAAVEAGDIIANW
DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL
VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITSAGDSEFLEGEQVEVSRVKIANRDLIEQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaattcaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccggtcaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggcgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgagctggctagcccagttgcccacatttggttcttgaaatcactg
ccgtcccgtatcggtttaatgctggacatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatctttcgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaaactatctggacgcattagaagaatacggtgacgaattcgaagctaagatg
ggtgctgaagcggtattagaactgctgcgcgcaatcgatctcgaaaaagaaatcgaacaa
atgcgtgaagagctgccatcaatcaactctgagactcgtcgcaagaaagtgaccaagcgt
cttaagttgatggaagcgttccacacttctggcaacaagccagagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccggacatcatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattactggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttaggtaagcgtgttgactactcaggtcgttcggtaattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctggaaggtcgtggcttagcgacaaccatcaaagcggctaagaagatg
gtagagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtgatgcttaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaacctgta
ctgattgaaggtaaagccatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagct
cgtgccctgatgatgtctaccaacaacatcctgtcaccagcaaacggcgagcctgttatc
actccgtctcaagacgtggtattaggtctgtactacaccagccgtgaacgtatcaacggc
cgtggtgaaggtatgtactttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgtgtgaaagtgcgtatcactgaaaccgttatcggtgacaat
ggtgagcgtactgagcaacgtcgtatcgtagatacaactgtgggtcgtgctctgctgtca
caaattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atatctaaactattgaacacttgttaccgtcaattaggtctgaaagatactgttatcttc
gctgaccaactgatgtacacaggtttccgttacgccactatctctggtgcatctgtcggt
atcgacgacatggtgatcccagctgagaagtacaccttagttgctgacgctgaagcagaa
gtgctcgagattcaagagcagttccaatcaggtctggtaaccgcgggtgagcgttacaac
aaagtcatcgacatctgggcaagtgcgaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagagaaacaagcttcgttcaac
agcatttacatgatggccgattcgggcgctcgtggtagtgccgcacagatccgtcagtta
gcgggtatgcgtggtttgatggcgaaaccagacggttcgatcatcgaaaccccaatcgtg
gcgaacttccgtgaaggtctgaacgttcttcagtacttcatctcaacccacggtgcgcgt
aaaggtcttgccgataccgcattgaagacagcgaactcgggttacctgactcgtcgtctg
gttgacgttgctcaagacttagtggtcatcgaagacgattgtggtactcacgaaggtctg
acaatgaagccgctgatcgaaggtggtgacgttgttgagccattacgtgaacgcgtactg
ggtcgtgtggttgctgttgatgttctgtacccaggtactgaagatgtgcttgcaccacgt
aacactctgctcgatgaagcatggtgtgacaagttagaagaacactcaatcgacgaagtg
attgtacgttcagtaattacctgtgataccgacttcggtgtgtgtgcggcatgttatggc
cgtgacttagcccgtggtcacctgattaaccacggcgaagccatcggtgttgtcgcggcg
caatcaatcggtgaacctggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatcgagagcgtctgcagaaaacaacgttcaagtgaagaactctggttcgttgaaactg
cacaacgctaagtacgtaactaacactgacggcaagctggttatcgtttctcgttcttct
gagctggcgatcatcgacgaattaggtcgtgagaaagagcgttataaagtgccttacggt
actgtgctcgagaagttagaagaagctgcggtagaagcgggcgatatcatcgctaactgg
gatccacatactcacccaatcatcactgaagtggcgggtagtattaagttcgttgacatg
atcgacggcgtgaccatgactcgtcaaacagacgaactgactggtctgtcttcaatcgtg
atcctcgacgtgggtcaacgtggttcagcgggtaaagaaatgcgcccaatgatccgtctg
gttggtgccgatggtagcgacctgatgatcccaggtactgaagtaccagcacaatacttc
ttaccaggcagtgcgatcgttaacctcgacgacaacgcgcaaatcgccgtgggtgacgcg
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcacgggtggtctaccacgc
gttgctgacctgttcgaagctcgtaagccaaaagagccagctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggcaagcgtcgtctggtgattacaccagcg
gatggcggtgaacagtacgaagagatgatcccgaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgctgacggtccagaagcggcgcacgacatt
ctgcgtctacgtggcatccacaacgtagcaaactacattgtgaacgaagtacaagacgta
taccgtttacaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgcgtgatcacctctgcgggtgacagtgagttcttagaaggcgaacaagtt
gaagtgtctcgcgtgaagatcgctaaccgcgacctgatcgaacaaggcaaagtgcctgcg
accttcgagcgtgaactgctgggtattaccaaggcgtctctggcaacagaatcgtttatc
tctgcagcatcgttccaagaaaccactcgcgtactgacagaagctgccgtaggtggtaag
tctgataacttacgtggtctgaaagagaacgtaatcgttggccgtctgatcccagccggt
actggttatgcttatcataagacccgtaacgatgcccgtgctaagaaagacgagccagtt
gtagtgaataagatcactgcaagtgaagcagaacaaaaccttgcagacctcttaaacctg
gctggtagccaagattaa
DBGET
integrated database retrieval system
